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Joint X-ray and NMR Refinement of Yeast L30e-mRNA complex

Source organisms:
Biochemical function: pre-mRNA 5'-splice site binding
Biological process: negative regulation of mRNA splicing, via spliceosome
Cellular component: ribonucleoprotein complex

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GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF01248
Domain description: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Occurring in:
  1. Large ribosomal subunit protein eL30
The deposited structure of PDB entry 1t0k contains 1 copy of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in Large ribosomal subunit protein eL30. Showing 1 copy in chain D [auth B].

PF01547
Domain description: Bacterial extracellular solute-binding protein
Occurring in:
  1. Maltose/maltodextrin-binding periplasmic protein
The deposited structure of PDB entry 1t0k contains 1 copy of Pfam domain PF01547 (Bacterial extracellular solute-binding protein) in Maltose/maltodextrin-binding periplasmic protein. Showing 1 copy in chain C [auth A].

InterPro InterPro annotations
IPR006060
Domain description: Maltose/Cyclodextrin ABC transporter, substrate-binding protein
Occurring in:
  1. Maltose/maltodextrin-binding periplasmic protein
IPR022991
Domain description: Large ribosomal subunit protein eL30, conserved site
Occurring in:
  1. Large ribosomal subunit protein eL30
IPR029064
Domain description: Ribosomal protein eL30-like superfamily
Occurring in:
  1. Large ribosomal subunit protein eL30
IPR004038
Domain description: Ribosomal protein eL8/eL30/eS12/Gadd45
Occurring in:
  1. Large ribosomal subunit protein eL30
IPR039109
Domain description: Large ribosomal subunit protein eL30-like
Occurring in:
  1. Large ribosomal subunit protein eL30
IPR006061
Domain description: Solute-binding family 1, conserved site
Occurring in:
  1. Maltose/maltodextrin-binding periplasmic protein
IPR006059
Domain description: Bacterial-type extracellular solute-binding protein
Occurring in:
  1. Maltose/maltodextrin-binding periplasmic protein

Structure domains

CATH CATH domains
3.40.190.10
Class: Alpha Beta
Architecture: 3-Layer(aba) Sandwich
Topology: D-Maltodextrin-Binding Protein; domain 2
Homology: Periplasmic binding protein-like II
Occurring in:
  1. Maltose/maltodextrin-binding periplasmic protein
The deposited structure of PDB entry 1t0k contains 2 copies of CATH domain 3.40.190.10 (D-Maltodextrin-Binding Protein; domain 2) in Maltose/maltodextrin-binding periplasmic protein. Showing 2 copies in chain C [auth A].
3.30.1330.30
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: 60s Ribosomal Protein L30; Chain: A;
Homology: 60s Ribosomal Protein L30; Chain: A;
Occurring in:
  1. Large ribosomal subunit protein eL30
The deposited structure of PDB entry 1t0k contains 1 copy of CATH domain 3.30.1330.30 (60s Ribosomal Protein L30; Chain: A;) in Large ribosomal subunit protein eL30. Showing 1 copy in chain D [auth B].
SCOP SCOP annotations
55316
Class: Alpha and beta proteins (a+b)
Fold: Bacillus chorismate mutase-like
Superfamily: L30e-like
Occurring in:
  1. Large ribosomal subunit protein eL30
The deposited structure of PDB entry 1t0k contains 1 copy of SCOP domain 55316 (L30e/L7ae ribosomal proteins) in Large ribosomal subunit protein eL30. Showing 1 copy in chain D [auth B].
53851
Class: Alpha and beta proteins (a/b)
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Occurring in:
  1. Maltose/maltodextrin-binding periplasmic protein
The deposited structure of PDB entry 1t0k contains 1 copy of SCOP domain 53851 (Phosphate binding protein-like) in Maltose/maltodextrin-binding periplasmic protein. Showing 1 copy in chain C [auth A].

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