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Atomic coordinates for subtilisin BPN' (or Novo).

Alden RA, Birktoft JJ, Kraut J, Robertus JD, Wright CS
Biochem Biophys Res Commun 45 337-44 (1971)
Cited: 73 times
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Reviews - 1sbt mentioned but not cited (4)

  1. The limits of protein sequence comparison? Pearson WR, Sierk ML. Curr Opin Struct Biol 15 254-260 (2005)
  2. Structure and mechanism of lanthipeptide biosynthetic enzymes. van der Donk WA, Nair SK. Curr Opin Struct Biol 29 58-66 (2014)
  3. Overview of protein structural and functional folds. Sun PD, Foster CE, Boyington JC. Curr Protoc Protein Sci Chapter 17 Unit 17.1 (2004)
  4. Biophysical highlights from 54 years of macromolecular crystallography. Richardson JS, Richardson DC. Biophys J 106 510-525 (2014)

Articles - 1sbt mentioned but not cited (8)

  1. Differential geometry based solvation model I: Eulerian formulation. Chen Z, Baker NA, Wei GW. J Comput Phys 229 8231-8258 (2010)
  2. Multiple structural alignment by secondary structures: algorithm and applications. Dror O, Benyamini H, Nussinov R, Wolfson HJ. Protein Sci 12 2492-2507 (2003)
  3. Tautomerism, acid-base equilibria, and H-bonding of the six histidines in subtilisin BPN' by NMR. Day RM, Thalhauser CJ, Sudmeier JL, Vincent MP, Torchilin EV, Sanford DG, Bachovchin CW, Bachovchin WW. Protein Sci 12 794-810 (2003)
  4. Mapping of ligand-binding cavities in proteins. Andersson CD, Chen BY, Linusson A. Proteins 78 1408-1422 (2010)
  5. Molecular determinants of binding to the Plasmodium subtilisin-like protease 1. Fulle S, Withers-Martinez C, Blackman MJ, Morris GM, Finn PW. J Chem Inf Model 53 573-583 (2013)
  6. Direct proton magnetic resonance determination of the pKa of the active center histidine in thiolsubtilisin. Kahyaoglu A, Jordan F. Protein Sci 11 965-973 (2002)
  7. Structural phylogeny by profile extraction and multiple superimposition using electrostatic congruence as a discriminator. Chakraborty S, Rao BJ, Baker N, Asgeirsson B. Intrinsically Disord Proteins 1 e25463 (2013)
  8. Crystallization of the virulent and benign subtilisin-like proteases from the ovine footrot pathogen Dichelobacter nodosus. Wong W, Kennan RM, Rosado CJ, Rood JI, Whisstock JC, Porter CJ. Acta Crystallogr Sect F Struct Biol Cryst Commun 66 289-293 (2010)


Reviews citing this publication (4)

  1. beta-Sheet topology and the relatedness of proteins. Richardson JS. Nature 268 495-500 (1977)
  2. Protein folding. Némethy G, Scheraga HA. Q Rev Biophys 10 239-252 (1977)
  3. Standard structures in proteins. Efimov AV. Prog Biophys Mol Biol 60 201-239 (1993)
  4. Large macromolecular complexes in the Protein Data Bank: a status report. Dutta S, Berman HM. Structure 13 381-388 (2005)

Articles citing this publication (57)

  1. Interior and surface of monomeric proteins. Miller S, Janin J, Lesk AM, Chothia C. J Mol Biol 196 641-656 (1987)
  2. Comparison of super-secondary structures in proteins. Rao ST, Rossmann MG. J Mol Biol 76 241-256 (1973)
  3. Beta-turns in proteins. Chou PY, Fasman GD. J Mol Biol 115 135-175 (1977)
  4. Conformation of beta-hairpins in protein structures. A systematic classification with applications to modelling by homology, electron density fitting and protein engineering. Sibanda BL, Blundell TL, Thornton JM. J Mol Biol 206 759-777 (1989)
  5. Suggestions for "safe" residue substitutions in site-directed mutagenesis. Bordo D, Argos P. J Mol Biol 217 721-729 (1991)
  6. Contributions of tryptophan side chains to the far-ultraviolet circular dichroism of proteins. Woody RW. Eur Biophys J 23 253-262 (1994)
  7. Energetics of charge-charge interactions in proteins. Gilson MK, Honig BH. Proteins 3 32-52 (1988)
  8. Crystal and molecular structures of native and CTP-liganded aspartate carbamoyltransferase from Escherichia coli. Honzatko RB, Crawford JL, Monaco HL, Ladner JE, Ewards BF, Evans DR, Warren SG, Wiley DC, Ladner RC, Lipscomb WN. J Mol Biol 160 219-263 (1982)
  9. The reverse turn as a polypeptide conformation in globular proteins. Crawford JL, Lipscomb WN, Schellman CG. Proc Natl Acad Sci U S A 70 538-542 (1973)
  10. Handedness of crossover connections in beta sheets. Richardson JS. Proc Natl Acad Sci U S A 73 2619-2623 (1976)
  11. An explanation for the rare occurrence of cis peptide units in proteins and polypeptides. Ramachandran GN, Mitra AK. J Mol Biol 107 85-92 (1976)
  12. Use of techniques derived from graph theory to compare secondary structure motifs in proteins. Mitchell EM, Artymiuk PJ, Rice DW, Willett P. J Mol Biol 212 151-166 (1990)
  13. Crystal structure of thermitase at 1.4 A resolution. Teplyakov AV, Kuranova IP, Harutyunyan EH, Vainshtein BK, Frömmel C, Höhne WE, Wilson KS. J Mol Biol 214 261-279 (1990)
  14. Novel method for the rapid evaluation of packing in protein structures. Gregoret LM, Cohen FE. J Mol Biol 211 959-974 (1990)
  15. The low barrier hydrogen bond (LBHB) proposal revisited: the case of the Asp... His pair in serine proteases. Schutz CN, Warshel A. Proteins 55 711-723 (2004)
  16. Packing of alpha-helices onto beta-pleated sheets and the anatomy of alpha/beta proteins. Janin J, Chothia C. J Mol Biol 143 95-128 (1980)
  17. A proposed model for interaction of polypeptides with RNA. Carter CW, Kraut J. Proc Natl Acad Sci U S A 71 283-287 (1974)
  18. An analysis of side-chain conformation in proteins. Bhat TN, Sasisekharan V, Vijayan M. Int J Pept Protein Res 13 170-184 (1979)
  19. Crystal and molecular structure of chymotrypsin inhibitor 2 from barley seeds in complex with subtilisin Novo. McPhalen CA, Svendsen I, Jonassen I, James MN. Proc Natl Acad Sci U S A 82 7242-7246 (1985)
  20. Characterization of multiple bends in proteins. Isogai Y, Némethy G, Rackovsky S, Leach SJ, Scheraga HA. Biopolymers 19 1183-1210 (1980)
  21. The EVB as a quantitative tool for formulating simulations and analyzing biological and chemical reactions. Kamerlin SC, Warshel A. Faraday Discuss 145 71-106 (2010)
  22. Relationship between mutability, polarity and exteriority of amino acid residues in protein evolution. Go M, Miyazawa S. Int J Pept Protein Res 15 211-224 (1980)
  23. Crystal structures of Streptomyces subtilisin inhibitor and its complex with subtilisin BPN'. Mitsui Y, Satow Y, Watanabe Y, Hirono S, Iitaka Y. Nature 277 447-452 (1979)
  24. Two cis-prolines in the Bence-Jones protein Rei and the cis-pro-bend. Huber R, Steigemann W. FEBS Lett 48 235-237 (1974)
  25. An analysis of non-bonded energy of proteins. Oobatake M, Ooi T. J Theor Biol 67 567-584 (1977)
  26. Beta-breakers: an aperiodic secondary structure. Colloc'h N, Cohen FE. J Mol Biol 221 603-613 (1991)
  27. Comparison of the active site stereochemistry and substrate conformation in -chymotrypsin and subtilisin BPN'. Wright CS. J Mol Biol 67 151-163 (1972)
  28. On the reactivity of the thiol group of thiolsubtilisin. Polgár L, Halász P. Eur J Biochem 39 421-429 (1973)
  29. Representation of short and long-range handedness in protein structures by signed distance maps. Braun W. J Mol Biol 163 613-621 (1983)
  30. Evidence that the Bacillus subtilis SpoIIGA protein is a novel type of signal-transducing aspartic protease. Imamura D, Zhou R, Feig M, Kroos L. J Biol Chem 283 15287-15299 (2008)
  31. Human glutaminyl cyclase and bacterial zinc aminopeptidase share a common fold and active site. Booth RE, Lovell SC, Misquitta SA, Bateman RC. BMC Biol 2 2 (2004)
  32. Negatively charged reactants as probes in the study of the essential mercaptide-imidazolium ion-pair of thiolenzymes. Halász P, Polgár L. Eur J Biochem 79 491-494 (1977)
  33. Crystal structure of the complex of subtilisin BPN' with its protein inhibitor Streptomyces subtilisin inhibitor. The structure at 4.3 Angstroms resolution. Hirono S, Nakamura KT, Iitaka Y, Mitsui Y. J Mol Biol 131 855-869 (1979)
  34. Use of methyl iodide for probing the polarity of the immediate environment of --SH groups in thiolenzymes. Reaction of methyl iodide with thiosubtilisin. Halász P, Polgár L. Eur J Biochem 71 563-569 (1976)
  35. Role of Asp102 in the enzymatic reaction of bovine beta-trypsin. A molecular orbital study. Umeyama H, Nakagawa S, Kudo T. J Mol Biol 150 409-421 (1981)
  36. Effect of the immediate environment on the reactivity of the essential -SH group of papain. Halász P, Polgár L. Eur J Biochem 71 571-575 (1976)
  37. Logical analysis of the mechanism of protein folding III. Prediction of the strong long-range interactions. Nagano K, Hasegawa K. J Mol Biol 94 257-281 (1975)
  38. Crystal structure of a subtilisin BPN' complex with N-benzoyl-L-arginine. Wright CS, Alden RA, Kraut J. J Mol Biol 66 283-289 (1972)
  39. Local densities orthogonal to beta-sheet amide planes: patterns of packing in globular proteins. Beardsley DS, Kauzmann WJ. Proc Natl Acad Sci U S A 93 4448-4453 (1996)
  40. Crystal structure of thermitase from Thermoactinomyces vulgaris at 2.2 A resolution. Teplyakov AV, Kuranova IP, Harutyunyan EH, Frömmel C, Höhne WE. FEBS Lett 244 208-212 (1989)
  41. The role of local tight packing of hydrophobic groups in beta-structure. Vtyurin N. Proteins 15 62-70 (1993)
  42. Rational protein engineering and industrial application: structure prediction by homology and rational design of protein-variants with improved 'washing performance'--the alkaline protease from Bacillus alcalophilus. Aehle W, Sobek H, Amory A, Vetter R, Wilke D, Schomburg D. J Biotechnol 28 31-40 (1993)
  43. Solvent accessibilities in glycyl, alanyl and seryl dipeptides. Manavalan P, Ponnuswamy PK, Srinivasan AR. Biochem J 167 171-182 (1977)
  44. Thermodynamic integration calculations of binding free energy difference for Gly-169 mutation in subtilisin BPN'. Wang CX, Shi YY, Zhou F, Wang L. Proteins 15 5-9 (1993)
  45. Interaction of GroEL and GroEL/GroES complexes with a nonnative subtilisin variant: a small-angle neutron scattering study. Krueger S, Gregurick SK, Zondlo J, Eisenstein E. J Struct Biol 141 240-258 (2003)
  46. Metals in proteins: cluster analysis studies. Tamames JA, Ramos MJ. J Mol Model 17 429-442 (2011)
  47. Protonated form of histidine 238 quenches the fluorescence of tryptophan 241 in subtilisin Novo. Shopova M, Genov N. Int J Pept Protein Res 21 475-478 (1983)
  48. Binding of rabbit immunoglobulin G Fab fragments to subtilisin Carlsberg. Stauffer CE. Immunochemistry 10 129-137 (1973)
  49. Evaluation of protein 3-D structure prediction: comparison of modelled and X-ray structure of an alkaline serine protease. Aehle W, Sobek H, Schomburg D. J Biotechnol 41 211-219 (1995)
  50. Mechanism-controlled stereospecificity. Acylation of subtilisin with enantiomeric alkyl and nitrophenyl ester substrates. Polgár L, Fejes J. Eur J Biochem 102 531-536 (1979)
  51. Refinement of the X-ray Structure of Rubredoxin by Conformational Energy Calculations. Rasse D, Warme PK, Scheraga HA. Proc Natl Acad Sci U S A 71 3736-3740 (1974)
  52. On the stereochemistry of catalysis by serine proteases. Polgár L, Asbóth B. J Theor Biol 46 543-558 (1974)
  53. Comparative characterization of the substrate-binding subsites in subtilisins DY and Carlsberg by fluorescence and kinetic studies. Boteva R, Dimov I, Genov N, Fittkau S, Peters K. J Photochem Photobiol B 1 461-468 (1988)
  54. Distinguishing Histidine Tautomers in Proteins Using Covalent Labeling-Mass Spectrometry. Pan X, Kirsch ZJ, Vachet RW. Anal Chem 94 1003-1010 (2022)
  55. From crystals to enzymes: simple models of molecular recognition. Czugler M. J Mol Recognit 6 187-194 (1993)
  56. Synthesis, conformation and reactivity towards p-nitrophenyl acetate of polypeptides incorporating aspartic acid, serine and histidine. Trudelle Y. Int J Pept Protein Res 19 528-535 (1982)
  57. The analysis of globular proteins as defect containing cylindrical crystals. Chandler HD, Hepburn HR. J Theor Biol 84 311-334 (1980)


Related citations provided by authors (8)

  1. Polypeptide Halomethyl Ketones Bind to Serine Proteases as Analogs of the Tetrahedral Intermediate,X-Ray Crystallographic Comparison of Lysine-and Phenylalanine-Polypeptide Chloromethyl Ketone-Inhibited Subtilisin. Poulos TL, Alden RA, Freer ST, Birktoft JJ, Kraut J J. Biol. Chem. 251 1097- (1976)
  2. X-Ray Crystallographic Study of Boronic Acid Adducts with Subtilisin Bpn(Novo),A Model for the Catalytic Transition State. Matthews DA, Alden RA, Birktoft JJ, Freer ST, Kraut J J. Biol. Chem. 250 7120- (1975)
  3. Subtilisin,A Stereochemical Mechanism Involving Transition-State Stabilization. Robertus JD, Kraut J, Alden RA, Birktoft JJ Biochemistry 11 4293- (1972)
  4. An X-Ray Crystallographic Study of the Binding of Peptide Chloromethyl Ketone Inhibitors to Subtilisin Bpn. Robertus JD, Alden RA, Birktoft JJ, Kraut J, Powers JC, Wilcox PE Biochemistry 11 2439- (1972)
  5. The Aromatic Substrate Binding Site in Subtilisin Bpnand its Resemblance to Chymotrypsin. Kraut J, Robertus JD, Birktoft JJ, Alden RA, Wilcox PE, Powers JC Cold Spring Harb. Symp. Quant. Biol. 36 117- (1972)
  6. On the Identity of Subtilisins Bpnand Novo. Robertus JD, Alden RA, Kraut J Biochem. Biophys. Res. Commun. 42 334- (1971)
  7. A Hydrogen-Bond Network at the Active Site of Subtilisin Bpn. Alden RA, Wright CS, Kraut J Philos. Trans. R. Soc. London,Ser. B 257 119- (1970)
  8. Structure of Subtilisin Bpnat 2.5 Angstroms Resolution. Wright CS, Alden RA, Kraut J Nature 221 235- (1969)

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