PDBe 1qd7

X-ray diffraction
5.5Å resolution

PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero decamer (preferred)
Entry contents:
8 distinct polypeptide molecules
2 distinct RNA molecules
Macromolecules (10 distinct):
30S ribosomal protein S4 Chain: C
Molecule details ›
Chain: C
Length: 159 amino acids
Theoretical weight: 18.62 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P81288 (Residues: 43-200; Coverage: 79%)
Gene name: rpsD
Sequence domains: S4 domain
30S ribosomal protein S5 Chain: D
Molecule details ›
Chain: D
Length: 145 amino acids
Theoretical weight: 15.24 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P02357 (Residues: 4-148; Coverage: 87%)
Gene name: rpsE
Sequence domains: Ribosomal protein S5, N-terminal domain
30S ribosomal protein S6 Chain: E
Molecule details ›
Chain: E
Length: 97 amino acids
Theoretical weight: 11.62 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: Q5SLP8 (Residues: 1-97; Coverage: 96%)
Gene names: TTHA0245, rpsF
Sequence domains: Ribosomal protein S6
30S ribosomal protein S7 Chain: F
Molecule details ›
Chain: F
Length: 135 amino acids
Theoretical weight: 15.34 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P17291 (Residues: 12-146; Coverage: 87%)
Gene names: TTHA1696, rps7, rpsG
30S ribosomal protein S8 Chain: G
Molecule details ›
Chain: G
Length: 136 amino acids
Theoretical weight: 15.62 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P0DOY9 (Residues: 3-138; Coverage: 99%)
Gene names: TTHA1678, rpsH
30S ribosomal protein S15 Chain: H
Molecule details ›
Chain: H
Length: 85 amino acids
Theoretical weight: 10.2 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P05766 (Residues: 3-87; Coverage: 96%)
Gene name: rpsO
30S ribosomal protein S17 Chain: I
Molecule details ›
Chain: I
Length: 89 amino acids
Theoretical weight: 10.08 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P23828 (Residues: 6-87; Coverage: 94%)
Gene name: rpsQ
Sequence domains: Ribosomal protein S17
S20 RIBOSOMAL PROTEIN Chain: J
Molecule details ›
Chain: J
Length: 100 amino acids
Theoretical weight: 8.53 KDa
Source organism: Thermus thermophilus
END FRAGMENT OF 16 S RNA Chain: B
Molecule details ›
Chain: B
Length: 88 nucleotides
Theoretical weight: 17.21 KDa
CENTRAL FRAGMENT OF 16 S RNA Chain: A
Molecule details ›
Chain: A
Length: 271 nucleotides
Theoretical weight: 53.1 KDa

Ligands and Environments

No bound ligands

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X25
Spacegroup: P41212
Unit cell:
a: 401.6Å b: 401.6Å c: 174.5Å
α: 90° β: 90° γ: 90°