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Di-haemic Cytochrome c Peroxidase from Pseudomonas nautica 617, form IN (pH 4.0)

X-ray diffraction
2.2Å resolution
PDB entry 1nml coloured by chain, front view.
PDB entry 1nml coloured by chain, side view.
PDB entry 1nml coloured by chain, top view.
Source organism: Marinobacter nauticus
Assemblies composition:
monomeric (preferred)
homo dimer
Entry contents: 1 distinct polypeptide molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Cytochrome c domain-containing protein
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Multimeric state: monomeric
Accessible surface area: 14427.41 Å2
Buried surface area: 3785.62 Å2
Dissociation area: 46.82 Å2
Dissociation energy (ΔGdiss): -3.49 kcal/mol
Dissociation entropy (TΔSdiss): 2.84 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-160740
Assembly 2
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Assembly Name: Cytochrome c domain-containing protein
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Multimeric state: homo dimer
Accessible surface area: 26322.4 Å2
Buried surface area: 10103.66 Å2
Dissociation area: 1,266.21 Å2
Dissociation energy (ΔGdiss): 11.21 kcal/mol
Dissociation entropy (TΔSdiss): 13.84 kcal/mol
Symmetry number: 2
PDBe Complex ID: PDB-CPX-160741

Macromolecules

Cytochrome c domain-containing protein
Chain: A
Length: 326 amino acids
Theoretical weight: 35.38 KDa
Source organism: Marinobacter nauticus
UniProt:
  • Canonical: P83787 (Residues: 1-326; Coverage: 100%)
Pfam:
InterPro:
CATH: Cytochrome c-like domain
SCOP: Di-heme cytochrome c peroxidase
Cytochrome c domain-containing protein in PDB entry 1nml, assembly 1, front view.
Cytochrome c domain-containing protein in PDB entry 1nml, assembly 1, side view.
Cytochrome c domain-containing protein in PDB entry 1nml, assembly 1, top view.
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