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CO(III)-BLEOMYCIN-OOH BOUND TO AN OLIGONUCLEOTIDE CONTAINING A PHOSPHOGLYCOLATE LESION

Solution NMR
PDB entry 1gj2 coloured by chain, front view.
PDB entry 1gj2 coloured by chain, side view.
PDB entry 1gj2 coloured by chain, top view.
Source organism: Synthetic construct
Assembly composition:
hetero trimer (preferred)
Entry contents: 3 distinct DNA molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: DNA
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Multimeric state: hetero trimer
Accessible surface area: 5250.19 Å2
Buried surface area: 3257.48 Å2
Dissociation area: 1,470.21 Å2
Dissociation energy (ΔGdiss): -15.23 kcal/mol
Dissociation entropy (TΔSdiss): 24.02 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-113870

Macromolecules

DNA chain A
Name: 5'-D(*CP*CP*AP*AP*AP*G)-3'
Representative chains: A
Source organism: Synthetic construct [32630]
Expression system: Not provided
Length: 6 nucleotides
Theoretical weight: 1.8 KDa
5'-D(*CP*CP*AP*AP*AP*G)-3' in PDB entry 1gj2, assembly 1, front view.
5'-D(*CP*CP*AP*AP*AP*G)-3' in PDB entry 1gj2, assembly 1, side view.
5'-D(*CP*CP*AP*AP*AP*G)-3' in PDB entry 1gj2, assembly 1, top view.
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DNA chain B
Name: 5'-D(P*AP*CP*TP*GP*GP*G)-3'
Representative chains: B
Source organism: Synthetic construct [32630]
Expression system: Not provided
Length: 6 nucleotides
Theoretical weight: 1.85 KDa
5'-D(P*AP*CP*TP*GP*GP*G)-3' in PDB entry 1gj2, assembly 1, front view.
5'-D(P*AP*CP*TP*GP*GP*G)-3' in PDB entry 1gj2, assembly 1, side view.
5'-D(P*AP*CP*TP*GP*GP*G)-3' in PDB entry 1gj2, assembly 1, top view.
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DNA chain C
Name: 5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3'
Representative chains: C
Source organism: Synthetic construct [32630]
Expression system: Not provided
Length: 13 nucleotides
Theoretical weight: 3.94 KDa
5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3' in PDB entry 1gj2, assembly 1, front view.
5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3' in PDB entry 1gj2, assembly 1, side view.
5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3' in PDB entry 1gj2, assembly 1, top view.
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