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The molecular structure of green fluorescent protein.

Yang F, Moss LG, Phillips GN
Nat Biotechnol 14 1246-51 (1996)
Cited: 782 times
EuropePMC logo PMID: 9631087

Abstract

The crystal structure of recombinant wild-type green fluorescent protein (GFP) has been solved to a resolution of 1.9 A by multiwavelength anomalous dispersion phasing methods. The protein is in the shape of a cylinder, comprising 11 strands of beta-sheet with an alpha-helix inside and short helical segments on the ends of the cylinder. This motif, with beta-structure on the outside and alpha-helix on the inside, represents a new protein fold, which we have named the beta-can. Two protomers pack closely together to form a dimer in the crystal. The fluorophores are protected inside the cylinders, and their structures are consistent with the formation of aromatic systems made up of Tyr66 with reduction of its C alpha-C beta bond coupled with cyclization of the neighboring glycine and serine residues. The environment inside the cylinder explains the effects of many existing mutants of GFP and suggests specific side chains that could be modified to change the spectral properties of GFP. Furthermore, the identification of the dimer contacts may allow mutagenic control of the state of assembly of the protein.

Reviews - 1gfl mentioned but not cited (8)

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Articles - 1gfl mentioned but not cited (119)

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  40. Photophysics and dihedral freedom of the chromophore in yellow, blue, and green fluorescent protein. Megley CM, Dickson LA, Maddalo SL, Chandler GJ, Zimmer M. J Phys Chem B 113 302-308 (2009)
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  42. An improved optical tweezers assay for measuring the force generation of single kinesin molecules. Nicholas MP, Rao L, Gennerich A. Methods Mol Biol 1136 171-246 (2014)
  43. Direct imaging of liquid domains in membranes by cryo-electron tomography. Cornell CE, Mileant A, Thakkar N, Lee KK, Keller SL. Proc Natl Acad Sci U S A 117 19713-19719 (2020)
  44. Calmodulin is a functional regulator of Cav1.4 L-type Ca2+ channels. Griessmeier K, Cuny H, Rötzer K, Griesbeck O, Harz H, Biel M, Wahl-Schott C. J Biol Chem 284 29809-29816 (2009)
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  50. Mapping transmembrane binding partners for E-cadherin ectodomains. Shafraz O, Xie B, Yamada S, Sivasankar S. Proc Natl Acad Sci U S A 117 31157-31165 (2020)
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  52. TCR-pMHC bond conformation controls TCR ligand discrimination. Sasmal DK, Feng W, Roy S, Leung P, He Y, Cai C, Cao G, Lian H, Qin J, Hui E, Schreiber H, Adams EJ, Huang J. Cell Mol Immunol 17 203-217 (2020)
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  60. Type III secretion system effector proteins are mechanically labile. LeBlanc MA, Fink MR, Perkins TT, Sousa MC. Proc Natl Acad Sci U S A 118 e2019566118 (2021)
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  62. Nanometer-accuracy distance measurements between fluorophores at the single-molecule level. Niekamp S, Sung J, Huynh W, Bhabha G, Vale RD, Stuurman N. Proc Natl Acad Sci U S A 116 4275-4284 (2019)
  63. Deciphering the preference and predicting the viability of circular permutations in proteins. Lo WC, Dai T, Liu YY, Wang LF, Hwang JK, Lyu PC. PLoS One 7 e31791 (2012)
  64. Live-Cell Cardiac-Specific High-Throughput Screening Platform for Drug-Like Molecules that Enhance Ca2+ Transport. Schaaf TM, Kleinboehl E, Yuen SL, Roelike LN, Svensson B, Thompson AR, Cornea RL, Thomas DD. Cells 9 E1170 (2020)
  65. Module based antibody engineering: a novel synthetic REDantibody. Markiv A, Anani B, Durvasula RV, Kang AS. J Immunol Methods 364 40-49 (2011)
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  68. Steric hindrance of SNARE transmembrane domain organization impairs the hemifusion-to-fusion transition. D'Agostino M, Risselada HJ, Mayer A. EMBO Rep 17 1590-1608 (2016)
  69. Structural basis for the development of avian virus capsids that display influenza virus proteins and induce protective immunity. Pascual E, Mata CP, Gómez-Blanco J, Moreno N, Bárcena J, Blanco E, Rodríguez-Frandsen A, Nieto A, Carrascosa JL, Castón JR. J Virol 89 2563-2574 (2015)
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  75. Blocking HIV-1 Infection by Chromosomal Integrative Expression of Human CD4 on the Surface of Lactobacillus acidophilus ATCC 4356. Wei W, Wiggins J, Hu D, Vrbanac V, Bowder D, Mellon M, Tager A, Sodroski J, Xiang SH. J Virol 93 e01830-18 (2019)
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  1. Understanding, Improving and Using Green Fluorescent Proteins. Cubitt AB, Heim R, Adams SR, Boyd AE, Gross LA, Tsien RY Trends Biochem. Sci. 20 448- (1995)

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