1ge2 Citations

Role of non-glycine residues in left-handed helical conformation for the conformational stability of human lysozyme.

Proteins 44 233-43 (2001)
Related entries: 1gdw, 1gdx, 1ge0, 1ge1, 1ge3, 1ge4

Cited: 11 times
EuropePMC logo PMID: 11455596

Abstract

To understand the role of non-Gly residues in the left-handed helical conformation for the conformational stability of a protein, the non-Gly to Gly and Ala mutations at six left-handed residues (R21, Y38, R50, Q58, H78, and N118) of the human lysozyme were examined. The thermodynamic parameters for denaturation were determined using a differential scanning calorimeter, and the crystal structures were analyzed by X-ray crystallography. If a left-handed non-Gly had an unfavorable steric interaction between the side-chain Cbeta and backbone, the Gly mutation would be expected to stabilize more than the Ala mutation at the same position. For the mutant human lysozymes, however, there were few differences in the denaturation Gibbs energy (DeltaG) between the Gly and Ala mutants, except for the substitution at position 58. Analysis of the changes in stability (DeltaDeltaG) based on the structures of the wild-type and mutant proteins showed that the experimental DeltaDeltaG value of Q58G was approximately 7 kJ/mol higher than the estimated value without consideration of any local steric interaction. These results indicate that only Q58G increased the stability by elimination of local constraints. The residue 58 is located at the most rigid position in the left-handed non-Gly residues and is involved in its enzymatic function. It can be concluded that the left-handed non-Gly residues do not always have unfavorable strain energies as compared with Gly at the same position.

Reviews citing this publication (1)

  1. Structural features of thermozymes. Li WF, Zhou XX, Lu P. Biotechnol Adv 23 271-281 (2005)

Articles citing this publication (10)

  1. Structural relationships in the lysozyme superfamily: significant evidence for glycoside hydrolase signature motifs. Wohlkönig A, Huet J, Looze Y, Wintjens R. PLoS One 5 e15388 (2010)
  2. A survey of left-handed helices in protein structures. Novotny M, Kleywegt GJ. J Mol Biol 347 231-241 (2005)
  3. Identification of a key structural element for protein folding within beta-hairpin turns. Kim J, Brych SR, Lee J, Logan TM, Blaber M. J Mol Biol 328 951-961 (2003)
  4. Asparagine and glutamine differ in their propensities to form specific side chain-backbone hydrogen bonded motifs in proteins. Vasudev PG, Banerjee M, Ramakrishnan C, Balaram P. Proteins 80 991-1002 (2012)
  5. Hydrophobic effect on the stability and folding of a hyperthermophilic protein. Dong H, Mukaiyama A, Tadokoro T, Koga Y, Takano K, Kanaya S. J Mol Biol 378 264-272 (2008)
  6. Proline effect on the thermostability and slow unfolding of a hyperthermophilic protein. Takano K, Higashi R, Okada J, Mukaiyama A, Tadokoro T, Koga Y, Kanaya S. J Biochem 145 79-85 (2009)
  7. Role of amino acid residues in left-handed helical conformation for the conformational stability of a protein. Takano K, Yamagata Y, Yutani K. Proteins 45 274-280 (2001)
  8. Sequence swapping does not result in conformation swapping for the beta4/beta5 and beta8/beta9 beta-hairpin turns in human acidic fibroblast growth factor. Kim J, Lee J, Brych SR, Logan TM, Blaber M. Protein Sci 14 351-359 (2005)
  9. Effect of heterochiral inversions on the structure of a β-hairpin peptide. Zerze GH, Stillinger FH, Debenedetti PG. Proteins 87 569-578 (2019)
  10. Functional characterization of the re-face loop spanning residues 536-541 and its interactions with the cofactor in the flavin mononucleotide-binding domain of flavocytochrome P450 from Bacillus megaterium. Kasim M, Chen HC, Swenson RP. Biochemistry 48 5131-5141 (2009)


Related citations provided by authors (1)

  1. Role of Amino Acid Residues at Turns in the Conformational Stability and Folding of Human Lysozyme. Takano K, Yamagata Y, Yutani K Biochemistry 39 8655-8665 (2000)