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PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-SEPARATED D+QAQB-STATE WITH THE PROTON TRANSFER INHIBITOR CD2+

X-ray diffraction
2.5Å resolution
PDB entry 1dv3 coloured by chain, front view.
PDB entry 1dv3 coloured by chain, side view.
PDB entry 1dv3 coloured by chain, top view.
Source organism: Cereibacter sphaeroides
Assembly composition:
hetero trimer (preferred)
Entry contents: 3 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Reaction Centre
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Multimeric state: hetero trimer
Accessible surface area: 30054.44 Å2
Buried surface area: 31285.68 Å2
Dissociation area: 4,244.99 Å2
Dissociation energy (ΔGdiss): 48.93 kcal/mol
Dissociation entropy (TΔSdiss): 14.66 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-142934
Assembly 2
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Assembly Name: Reaction Centre
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Multimeric state: hetero trimer
Accessible surface area: 30553.11 Å2
Buried surface area: 29513.24 Å2
Dissociation area: 4,057.89 Å2
Dissociation energy (ΔGdiss): 47.5 kcal/mol
Dissociation entropy (TΔSdiss): 14.62 kcal/mol
Symmetry number: 1
PDBe Complex ID: PDB-CPX-142934

Macromolecules

Reaction center protein L chain
Chains: L, R
Length: 281 amino acids
Theoretical weight: 31.35 KDa
Source organism: Cereibacter sphaeroides
UniProt:
  • Canonical: P0C0Y8 (Residues: 2-282; Coverage: 100%)
Gene name: pufL
Pfam: Photosynthetic reaction centre protein
InterPro:
CATH: Photosystem II protein D1-like
SCOP: Bacterial photosystem II reaction centre, L and M subunits
Reaction center protein L chain in PDB entry 1dv3, assembly 1, front view.
Reaction center protein L chain in PDB entry 1dv3, assembly 1, side view.
Reaction center protein L chain in PDB entry 1dv3, assembly 1, top view.
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Reaction center protein M chain
Chains: M, S
Length: 307 amino acids
Theoretical weight: 34.36 KDa
Source organism: Cereibacter sphaeroides
UniProt:
  • Canonical: P0C0Y9 (Residues: 2-308; Coverage: 100%)
Gene name: pufM
Pfam: Photosynthetic reaction centre protein
InterPro:
CATH: Photosystem II protein D1-like
SCOP: Bacterial photosystem II reaction centre, L and M subunits
Reaction center protein M chain in PDB entry 1dv3, assembly 1, front view.
Reaction center protein M chain in PDB entry 1dv3, assembly 1, side view.
Reaction center protein M chain in PDB entry 1dv3, assembly 1, top view.
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Reaction center protein H chain
Chains: H, T
Length: 260 amino acids
Theoretical weight: 28.14 KDa
Source organism: Cereibacter sphaeroides
UniProt:
  • Canonical: P0C0Y7 (Residues: 1-260; Coverage: 100%)
Gene name: puhA
Pfam:
InterPro:
CATH:
SCOP:
Reaction center protein H chain in PDB entry 1dv3, assembly 1, front view.
Reaction center protein H chain in PDB entry 1dv3, assembly 1, side view.
Reaction center protein H chain in PDB entry 1dv3, assembly 1, top view.
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