› 1uw8

X-ray diffraction
2Å resolution

CRYSTAL STRUCTURE OF OXALATE DECARBOXYLASE

Released:
DOI: 10.2210/pdb1uw8/pdb
PDB entry 1uw8 coloured by chain, front view.
PDB entry 1uw8 coloured by chain, side view.
PDB entry 1uw8 coloured by chain, top view.
Source organism: Bacillus subtilis
Primary publication:
A closed conformation of Bacillus subtilis oxalate decarboxylase OxdC provides evidence for the true identity of the active site.
Just VJ, Stevenson CE, Bowater L, Tanner A, Lawson DM, Bornemann S
J Biol Chem 279 19867-74 (2004)
PMID: 14871895

Function and Biology Details

Reaction catalysed: 
Oxalate = formate + CO(2)
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-128583 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Oxalate decarboxylase OxdC Chain: A
Molecule details ›
Chain: A
Length: 385 amino acids
Theoretical weight: 43.62 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O34714 (Residues: 1-385; Coverage: 100%)
Gene names: BSU33240, oxdC, yvrK
Sequence domains: Cupin
Structure domains: Jelly Rolls

Ligands and Environments

2 bound ligands:
Ligand MN 2 x MN
Ligand TRS 1 x TRS
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RUH3R
Spacegroup: R32
Unit cell:
a: 154.663Å b: 154.663Å c: 122.822Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.129 0.127 0.158
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

5 review citations

Structural studies on 2-oxoglutarate oxygenases and related double-stranded beta-helix fold proteins.
Clifton et al. (2006)
4 more

15 mentions without citation

Divergence and convergence in enzyme evolution.
Galperin et al. (2012)
14 more