EMD-8728

Helical reconstruction
4.1 Å
EMD-8728
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Deposition: 10/05/2017
Map released: 14/03/2018
Last modified: 13/03/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-8728
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3D volume (map.gz) Experimental metadata (xml) Experimental Metadata (cif.gz)
Map-only Validation report (pdf.gz) Map-only Validation report (cif.gz) Map-only Validation report (xml.gz)
Map and PDB model 5vrf summary report (pdf.gz) Map and 5vrf FULL report (pdf.gz)
EMICSS annotations (xml)

CryoEM Structure of the Zinc Transporter YiiP from helical crystals

EMD-8728

Helical reconstruction
4.1 Å
EMD-8728
3D View Gallery
Deposition: 10/05/2017
Map released: 14/03/2018
Last modified: 13/03/2024
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Name: YiiP dimer in an inward-facing conformation
Complex [1]
Name: YiiP dimer in an inward-facing conformation
Natural source [1]
Organism: Shewanella oneidensis MR-1
Molecular weight
Experimental Theoretical Method
- 60 kDa -
Protein [1]
LEVO
Name: Cadmium and zinc efflux pump FieF
Number of copies: 2
UniProtKB UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [13]
Biological process:
intracellular iron ion homeostasis intracellular zinc ion homeostasis cellular iron ion homeostasis cellular zinc ion homeostasis cellular cadmium ion homeostasis
Molecular function:
metal ion binding cadmium ion transmembrane transporter activity ferrous iron transmembrane transporter activity cation transmembrane transporter activity zinc efflux active transmembrane transporter activity
Cellular location:
plasma membrane integral component of membrane membrane
Natural source
Organism: Shewanella oneidensis MR-1
Strain: MR-1
Molecular weight
Experimental Theoretical Method
- 32 kDa -
Recombinant Expression
Organism Strain Cell Plasmid
Escherichia coli BL21(DE3) - - -
Ligand [1]
Name: ZINC ION
HET code: ZN
Number of copies: 8
ChEMBL ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 65 Da -