EMD-6976

Single-particle
3.75 Å
EMD-6976
3D View Gallery
Deposition: 31/05/2018
Map released: 10/10/2018
Last modified: 06/11/2019
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-6976
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3D volume (map.gz) Experimental metadata (xml)
Map-only Validation report (pdf.gz) Map-only Validation report (cif.gz) Map-only Validation report (xml.gz)
Map and PDB model 5zz8 summary report (pdf.gz) Map and 5zz8 FULL report (pdf.gz)
EMICSS annotations (xml)

Structure of the Herpes simplex virus type 2 C-capsid with capsid-vertex-specific component

EMD-6976

Single-particle
3.75 Å
EMD-6976
3D View Gallery
Deposition: 31/05/2018
Map released: 10/10/2018
Last modified: 06/11/2019
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Method: Single-particle
Aggregation State: Particle
Specimen preparation [1]
Buffer
pH: 7.4
Vitrification
Cryogen name: ETHANE
Microscopy [1]
Microscope: FEI TITAN KRIOS
Illumination mode: FLOOD BEAM
Imaging mode: OTHER
Electron source: FIELD EMISSION GUN
Acceleration voltage: 300 kV
Image Recording [1]
Detector model: GATAN K2 QUANTUM (4k x 4k)
Average electron dose per image: 30.0 e/Å2
Image processing [1]
Final reconstruction
Resolution: 3.75 Å ( BY AUTHOR)
Resolution method: FSC 0.143 CUT-OFF
Number of images used: 56901
⌯ Applied Symmetry
Point group: C1
⦨ Initial angle assignment
Type: MAXIMUM LIKELIHOOD
⦩ Final angle assignment
Type: MAXIMUM LIKELIHOOD
Map
Format: CCP4
Data type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Annotation details: Full_map
⬡ Geometry
X Y Z
Dimensions 1200 1200 1200
Origin 0 0 0
Spacing 1200 1200 1200
Voxel size 1.38 Å 1.38 Å 1.38 Å
Contour list
Primary Level Source
True 1.0 AUTHOR