EMD-3951

Single-particle
2.87 Å
EMD-3951
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Deposition: 25/10/2017
Map released: 11/04/2018
Last modified: 25/11/2020
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Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-3951
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EMICSS annotations (xml)

Reaction centre light harvesting complex 1 from Blc. virids

EMD-3951

Single-particle
2.87 Å
EMD-3951
3D View Gallery
Deposition: 25/10/2017
Map released: 11/04/2018
Last modified: 25/11/2020
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Name: Reaction centre-Light harvesting complex 1 (RC-LH1)
Complex [1]
Name: Reaction centre-Light harvesting complex 1 (RC-LH1)
Details: The protein was isolated from a photosynthetic bacterium Blc. viridis.
Natural source [1]
Organism: Blastochloris viridis
Molecular weight
Experimental Theoretical Method
414 kDa - -
Protein [7]
LEVO
Name: Photosynthetic reaction center cytochrome c subunit
Number of copies: 1
Details: Reaction centre cytochrome subunit
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
photosynthesis, light reaction photosynthesis
Molecular function:
electron transfer activity iron ion binding heme binding
Cellular location:
plasma membrane-derived chromatophore membrane plasma membrane light-harvesting complex
Natural source
Organism: Rhodopseudomonas viridis
Molecular weight
Experimental Theoretical Method
- 37 kDa -
LEVO
Name: Reaction center protein L chain
Number of copies: 1
Details: Reaction centre L subunit
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
photosynthetic electron transport in photosystem II protein-chromophore linkage
Molecular function:
metal ion binding bacteriochlorophyll binding electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Cellular location:
plasma membrane-derived chromatophore membrane integral component of membrane plasma membrane light-harvesting complex
Natural source
Organism: Rhodopseudomonas viridis
Molecular weight
Experimental Theoretical Method
- 30 kDa -
LEVO
Name: Reaction center protein M chain
Number of copies: 1
Details: Teaction centre M subunit
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [8]
Biological process:
protein-chromophore linkage photosynthetic electron transport in photosystem II
Molecular function:
bacteriochlorophyll binding electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity metal ion binding
Cellular location:
plasma membrane-derived chromatophore membrane integral component of membrane plasma membrane light-harvesting complex
Natural source
Organism: Rhodopseudomonas viridis
Molecular weight
Experimental Theoretical Method
- 35 kDa -
LEVO
Name: Reaction center protein H chain
Number of copies: 1
Details: Reaction centre H subunit
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [7]
Biological process:
protein-chromophore linkage photosynthesis, light reaction
Molecular function:
bacteriochlorophyll binding electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Cellular location:
integral component of membrane plasma membrane-derived chromatophore membrane plasma membrane light-harvesting complex
Natural source
Organism: Rhodopseudomonas viridis
Molecular weight
Experimental Theoretical Method
- 28 kDa -
LEVO
Name: Light-harvesting protein B-1015 alpha chain
Number of copies: 17
Details: Light harvesting complex 1 alpha subunit
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [5]
Biological process:
photosynthesis, light reaction
Molecular function:
electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Cellular location:
organelle inner membrane integral component of membrane plasma membrane light-harvesting complex
Natural source
Organism: Rhodopseudomonas viridis
Molecular weight
Experimental Theoretical Method
- 6 kDa -
LEVO
Name: Light-harvesting protein B-1015 beta chain
Number of copies: 17
Details: Light harvesting complex 1 beta subunit
UniProtKB PDBe-KB AlphaFold DB
Domains
Gene Ontology [4]
Biological process:
photosynthesis, light reaction
Molecular function:
electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Cellular location:
integral component of membrane plasma membrane light-harvesting complex
Natural source
Organism: Rhodopseudomonas viridis
Molecular weight
Experimental Theoretical Method
- 6 kDa -
LEVO
Name: Light-harvesting protein B-1015 gamma chain
Number of copies: 16
Details: Light harvesting complex 1 gamma subunit
UniProtKB PDBe-KB AlphaFold DB
Natural source
Organism: Rhodopseudomonas viridis
Molecular weight
Experimental Theoretical Method
- 2 kDa -
Ligand [10]
Name: PROTOPORPHYRIN IX CONTAINING FE
HET code: HEM
Number of copies: 4
ChEBI
Molecular weight
Experimental Theoretical Method
- 616 Da -
Name: BACTERIOCHLOROPHYLL B
HET code: BCB
Number of copies: 38
Molecular weight
Experimental Theoretical Method
- 909 Da -
Name: BACTERIOPHEOPHYTIN B
HET code: BPB
Number of copies: 2
Molecular weight
Experimental Theoretical Method
- 887 Da -
Name: Ubiquinone-9
HET code: UQ9
Number of copies: 2
Molecular weight
Experimental Theoretical Method
- 795 Da -
Name: FE (III) ION
HET code: FE
Number of copies: 1
ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 55 Da -
Name: SULFATE ION
HET code: SO4
Number of copies: 7
ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 96 Da -
Name: LAURYL DIMETHYLAMINE-N-OXIDE
HET code: LDA
Number of copies: 2
ChEMBL ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 229 Da -
Name: MENAQUINONE-9
HET code: MQ9
Number of copies: 1
Molecular weight
Experimental Theoretical Method
- 785 Da -
Name: 15-cis-1,2-dihydroneurosporene
HET code: NS5
Number of copies: 1
Molecular weight
Experimental Theoretical Method
- 540 Da -
Name: all-trans-1,2-dihydroneurosporene
HET code: NS0
Number of copies: 17
Molecular weight
Experimental Theoretical Method
- 540 Da -