EMD-2416
Negative staining 3D-EM of the HA complex of Botulinum toxin type A
EMD-2416
Single-particle30.0 Å
Deposition: 17/07/2013
Map released: 23/10/2013
Last modified: 23/10/2013
Concentration: 0.01
mg/mL
Buffer
pH: 7.6
Details: 50mM NaCl, 20mM Tris-HCL
Details: 50mM NaCl, 20mM Tris-HCL
Staining
Type:
NEGATIVE
Details: Grids with adsorbed protein floated on 1% w/v uranyl formate for 30 seconds
Details: Grids with adsorbed protein floated on 1% w/v uranyl formate for 30 seconds
Grid
Details: 300 mesh copper grid with carbon support, glow discharged in vacuumed air
Microscope: FEI TECNAI F20
Illumination mode: FLOOD BEAM
Imaging mode: BRIGHT FIELD
Electron source: FIELD EMISSION GUN
Acceleration voltage: 200 kV
Nominal CS: 2.0 mm
Nominal defocus: 1.5 µm - 3.6 µm
Calibrated magnification: 70000.0
Specimen holder model: SIDE ENTRY, EUCENTRIC
Alignment procedure: LEGACY (Astigmatism: Objective lens astigmatism was corrected at 70,000 times magnification., Electron beam tilt params: )
Minimum tilt angle: 0
Maximum tilt angle: 0
Illumination mode: FLOOD BEAM
Imaging mode: BRIGHT FIELD
Electron source: FIELD EMISSION GUN
Acceleration voltage: 200 kV
Nominal CS: 2.0 mm
Nominal defocus: 1.5 µm - 3.6 µm
Calibrated magnification: 70000.0
Specimen holder model: SIDE ENTRY, EUCENTRIC
Alignment procedure: LEGACY (Astigmatism: Objective lens astigmatism was corrected at 70,000 times magnification., Electron beam tilt params: )
Minimum tilt angle: 0
Maximum tilt angle: 0
Image Recording
[1]
Detector category:
CCD
Detector model: GENERIC TVIPS (4k x 4k)
Number of real images: 62
Average electron dose per image: 40 e/Å2
Bits per pixel: 8.0
Detector model: GENERIC TVIPS (4k x 4k)
Number of real images: 62
Average electron dose per image: 40 e/Å2
Bits per pixel: 8.0
Details: Image processing was done using EMAN2.The particles were selected by a semi-automatic selection using e2boxer.
Final
reconstruction
Resolution: 30.0
Å
(
BY AUTHOR)
Resolution method: FSC 0.5 CUT-OFF
Number of images used: 3746
Algorithm: OTHER
Details: C3 symmetry was imposed in refinement
Resolution method: FSC 0.5 CUT-OFF
Number of images used: 3746
Algorithm: OTHER
Details: C3 symmetry was imposed in refinement
⌯ Applied Symmetry
Point group:
C3
Software
[1]
Name | Version | Details |
---|---|---|
EMAN2 | - | - |
CTF correction
Details:Each particle
Format: CCP4
Data type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Annotation details: Negative staining 3D-EM of the HA complex of Botulinum toxin A
Details: ::::EMDATABANK.org::::EMD-2416::::
Data type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Annotation details: Negative staining 3D-EM of the HA complex of Botulinum toxin A
Details: ::::EMDATABANK.org::::EMD-2416::::
⬡ Geometry
X | Y | Z | |
---|---|---|---|
Dimensions | 120 | 120 | 120 |
Origin | -60 | -60 | -60 |
Spacing | 120 | 120 | 120 |
Voxel size | 4.28 Å | 4.28 Å | 4.28 Å |
Contour list
Primary | Level | Source |
---|---|---|
True | 0.55 | AUTHOR |