EMD-0099

Single-particle
3.6 Å
EMD-0099 Deposition: 03/07/2018
Map released: 05/12/2018
Last modified: 30/03/2022
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links

EMD-0099

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

EMD-0099

Single-particle
3.6 Å
EMD-0099 Deposition: 03/07/2018
Map released: 05/12/2018
Last modified: 30/03/2022
Overview 3D View Sample Experiment Validation Volume Browser Additional data Links
Name: TI-POST-2
Summary:
Complex [1]
Name: TI-POST-2
Natural source [1]
Molecular weight
Experimental Theoretical Method
- 4 MDa -
Protein [79]
Name: ribosomal protein uL2
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 27 kDa -
Name: ribosomal protein uS2
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 24 kDa -
Name: ribosomal protein uL3
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 45 kDa -
Name: ribosomal protein eS1
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 24 kDa -
Name: ribosomal protein uL4
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 41 kDa -
Name: ribosomal protein eS28
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 24 kDa -
Name: ribosomal protein uS3
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 24 kDa -
Name: ribosomal protein uS7
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 21 kDa -
Name: ribosomal protein eS10
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 11 kDa -
Name: ribosomal protein eS12
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 13 kDa -
Name: ribosomal protein uS19
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: ribosomal protein uS9
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 15 kDa -
Name: ribosomal protein eS17
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: ribosomal protein uS13
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 16 kDa -
Name: ribosomal protein eS19
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 15 kDa -
Name: ribosomal protein uS10
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 11 kDa -
Name: ribosomal protein uS10
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 9 kDa -
Name: ribosomal protein eS28
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 7 kDa -
Name: ribosomal protein uS14
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 6 kDa -
Name: ribosomal protein eS31
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 8 kDa -
Name: ribosomal protein RACK 1
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 34 kDa -
Name: ribosomal protein eS4
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 28 kDa -
Name: ribosomal protein eS6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 26 kDa -
Name: ribosomal protein eS7
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 20 kDa -
Name: ribosomal protein eS8
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 24 kDa -
Name: ribosomal protein uS4
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 21 kDa -
Name: ribosomal protein uS17
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 17 kDa -
Name: ribosomal protein uS15
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 17 kDa -
Name: ribosomal protein uS11
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: ribosomal protein eS21
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 8 kDa -
Name: ribosomal protein uS8
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: ribosomal protein uS12
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 15 kDa -
Name: ribosomal protein eS24
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: ribosomal protein eS26
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 11 kDa -
Name: ribosomal protein eS27
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 9 kDa -
Name: ribosomal protein eS30
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 6 kDa -
Name: ribosomal protein uL18
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 34 kDa -
Name: ribosomal protein eL6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 22 kDa -
Name: ribosomal protein uL30
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 27 kDa -
Name: ribosomal protein eL8
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 26 kDa -
Name: ribosomal protein uL6
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 21 kDa -
Name: ribosomal protein uL16
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 24 kDa -
Name: ribosomal protein uL5
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 19 kDa -
Name: ribosomal protein eL13
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 23 kDa -
Name: ribosomal protein eL14
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 16 kDa -
Name: ribosomal protein eL15
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 24 kDa -
Name: ribosomal protein uL13
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 22 kDa -
Name: ribosomal protein uL22
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 17 kDa -
Name: ribosomal protein eL18
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 21 kDa -
Name: ribosomal protein eL19
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 21 kDa -
Name: ribosomal protein eL20
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 20 kDa -
Name: ribosomal protein eL21
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 18 kDa -
Name: ribosomal protein eL22
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 11 kDa -
Name: ribosomal protein uL14
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 13 kDa -
Name: ribosomal protein eL24
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: ribosomal protein uL23
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 13 kDa -
Name: ribosomal protein uL24
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 15 kDa -
Name: ribosomal protein eL27
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 15 kDa -
Name: ribosomal protein uL15
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 16 kDa -
Name: ribosomal protein eL29
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 7 kDa -
Name: ribosomal protein eL30
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 11 kDa -
Name: ribosomal protein eL31
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 12 kDa -
Name: ribosomal protein eL32
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 15 kDa -
Name: ribosomal protein eL33
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 12 kDa -
Name: ribosomal protein eL34
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 12 kDa -
Name: ribosomal protein uL29
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 14 kDa -
Name: ribosomal protein eL36
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 11 kDa -
Name: ribosomal protein eL37
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 9 kDa -
Name: ribosomal protein eL38
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 8 kDa -
Name: ribosomal protein eL39
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 6 kDa -
Name: ribosomal protein eL40
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 5 kDa -
Name: ribosomal protein eL41
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 3 kDa -
Name: ribosomal protein eL42
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 12 kDa -
Name: ribosomal protein eL43
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 10 kDa -
Name: ribosomal protein eL28
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 13 kDa -
Name: ribosomal protein uL1
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 24 kDa -
Name: ribosomal protein uL11
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 16 kDa -
Name: ribosomal protein uL10
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 22 kDa -
Name: eukaryotic elongation factor 2 (eEF2)
Number of copies: 1
UniProtKB PDBe-KB AlphaFold DB
Natural source
Molecular weight
Experimental Theoretical Method
- 95 kDa -
RNA [7]
Name: 28S ribosomal RNA
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 1 MDa -
Name: ap/P-site tRNA
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 24 kDa -
Name: mRNA
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 3 kDa -
Name: pe/E-site-tRNA
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 24 kDa -
Name: 18S ribosomal RNA
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 551 kDa -
Name: 5.8S ribosomal RNA
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 50 kDa -
Name: 5S ribosomal RNA
Number of copies: 1
Natural source
Molecular weight
Experimental Theoretical Method
- 38 kDa -
Ligand [3]
Name: MAGNESIUM ION
HET code: MG
Number of copies: 327
ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 24 Da -
Name: ZINC ION
HET code: ZN
Number of copies: 5
ChEMBL ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 65 Da -
Name: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
HET code: GNP
Number of copies: 1
ChEMBL ChEBI DrugBank
Molecular weight
Experimental Theoretical Method
- 522 Da -