EMD-5472
Dynamics in Cryo EM Reconstructions Visualized with Maximum-Likelihood Derived Variance Maps
EMD-5472
Single-particle21.0 Å
Deposition: 19/08/2012
Map released: 02/10/2013
Last modified: 02/10/2013
Vitrification
Microscope: FEI TECNAI F20
Illumination mode: FLOOD BEAM
Imaging mode: BRIGHT FIELD
Electron source: FIELD EMISSION GUN
Acceleration voltage: 120 kV
Specimen holder model: GATAN LIQUID NITROGEN
Illumination mode: FLOOD BEAM
Imaging mode: BRIGHT FIELD
Electron source: FIELD EMISSION GUN
Acceleration voltage: 120 kV
Specimen holder model: GATAN LIQUID NITROGEN
Image Recording
[1]
Details: Data were collected using the Leginon automated electron microscopy package and data processing was performed using the Appion pipeline.
Details: The reconstruction uses a maximum likelihood algorithm that explicitly takes into account the continuous variability from one instance to another instance of the particle.
Final
reconstruction
Resolution: 21.0
Å
(
BY AUTHOR)
Resolution method: FSC 0.5 CUT-OFF
Number of images used: 1200
Algorithm: OTHER
Details:
Resolution method: FSC 0.5 CUT-OFF
Number of images used: 1200
Algorithm: OTHER
Details:
⌯ Applied Symmetry
Point group:
I
CTF correction
Details:Each image
Format: CCP4
Data type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Annotation details: Cryo-EM reconstruction of Nudaurelia capensis omega virus (NwV) capsid at 4hr time point following maturation initiation
Details: ::::EMDATABANK.org::::EMD-5472::::
Data type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Annotation details: Cryo-EM reconstruction of Nudaurelia capensis omega virus (NwV) capsid at 4hr time point following maturation initiation
Details: ::::EMDATABANK.org::::EMD-5472::::
⬡ Geometry
X | Y | Z | |
---|---|---|---|
Dimensions | 200 | 200 | 200 |
Origin | -100 | -100 | -100 |
Spacing | 200 | 200 | 200 |
Voxel size | 2.768 Å | 2.768 Å | 2.768 Å |
Contour list
Primary | Level | Source |
---|---|---|
True | 0.0001 | AUTHOR |