data_4YS5
#
_entry.id 4YS5
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country ?
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'To be published'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD 0353
_citation.journal_id_ISSN ?
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume ?
_citation.language ?
_citation.page_first ?
_citation.page_last ?
_citation.title "DNA sequence containing 2'-Se-dC modification."
_citation.year ?
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI ?
_citation.pdbx_database_id_PubMed ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Kong, C.' 1 ?
primary 'Zhang, W.' 2 ?
primary 'Salon, J.' 3 ?
primary 'Huang, Z.' 4 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "DNA (5'-D(*GP*TP*GP*GP*(2SC)P*CP*AP*C)-3')" 2520.592 1 ? ? ? ?
2 water nat water 18.015 14 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DG)(DG)(CSL)(DC)(DA)(DC)'
_entity_poly.pdbx_seq_one_letter_code_can GTGGCCAC
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
_pdbx_entity_nonpoly.entity_id 2
_pdbx_entity_nonpoly.name water
_pdbx_entity_nonpoly.comp_id HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DG n
1 2 DT n
1 3 DG n
1 4 DG n
1 5 CSL n
1 6 DC n
1 7 DA n
1 8 DC n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 8
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
CSL 'DNA linking' n "(D)-2'-METHYLSELENYL-2'-DEOXYCYTIDINE-5'-PHOSPHATE" "(D)-2'-DEOXY-2'-SE-METHYLCYTIDINE-5'-PHOSPHATE" 'C10 H16 N3 O7 P Se' 400.184
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DG 1 1 1 DG DG A . n
A 1 2 DT 2 2 2 DT DT A . n
A 1 3 DG 3 3 3 DG DG A . n
A 1 4 DG 4 4 4 DG DG A . n
A 1 5 CSL 5 5 5 CSL 2SC A . n
A 1 6 DC 6 6 6 DC DC A . n
A 1 7 DA 7 7 7 DA DA A . n
A 1 8 DC 8 8 8 DC DC A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HOH 1 101 3 HOH HOH A .
B 2 HOH 2 102 4 HOH HOH A .
B 2 HOH 3 103 15 HOH HOH A .
B 2 HOH 4 104 16 HOH HOH A .
B 2 HOH 5 105 10 HOH HOH A .
B 2 HOH 6 106 2 HOH HOH A .
B 2 HOH 7 107 5 HOH HOH A .
B 2 HOH 8 108 8 HOH HOH A .
B 2 HOH 9 109 13 HOH HOH A .
B 2 HOH 10 110 12 HOH HOH A .
B 2 HOH 11 111 14 HOH HOH A .
B 2 HOH 12 112 1 HOH HOH A .
B 2 HOH 13 113 18 HOH HOH A .
B 2 HOH 14 114 7 HOH HOH A .
#
_software.citation_id ?
_software.classification refinement
_software.compiler_name ?
_software.compiler_version ?
_software.contact_author ?
_software.contact_author_email ?
_software.date ?
_software.description ?
_software.dependencies ?
_software.hardware ?
_software.language ?
_software.location ?
_software.mods ?
_software.name REFMAC
_software.os ?
_software.os_version ?
_software.type ?
_software.version 5.8.0049
_software.pdbx_ordinal 1
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 90.00
_cell.angle_gamma_esd ?
_cell.entry_id 4YS5
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 41.621
_cell.length_a_esd ?
_cell.length_b 41.621
_cell.length_b_esd ?
_cell.length_c 25.067
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 8
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 4YS5
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 4YS5
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'X-ray diffraction'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 2.15
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 42.88
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 6.0
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 298
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details '10% MPD, sodium cacodylate, sodium chloride, barium chloride'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 80
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector CCD
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'MAR CCD 165 mm'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2014-12-01
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol 'Single wavelength'
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.987
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source Synchrotron
_diffrn_source.target ?
_diffrn_source.type 'NSLS BEAMLINE X25'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 0.987
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline X25
_diffrn_source.pdbx_synchrotron_site NSLS
#
_reflns.B_iso_Wilson_estimate ?
_reflns.entry_id 4YS5
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.65
_reflns.d_resolution_low 50
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 2939
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 99.7
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 14.7
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 52.9
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_R_split ?
#
_reflns_shell.d_res_high 1.65
_reflns_shell.d_res_low 1.68
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.meanI_over_sigI_obs 3.16
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_possible ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs ?
_reflns_shell.percent_possible_all 97.3
_reflns_shell.percent_possible_obs ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.meanI_over_sigI_gt ?
_reflns_shell.meanI_over_uI_all ?
_reflns_shell.meanI_over_uI_gt ?
_reflns_shell.number_measured_gt ?
_reflns_shell.number_unique_gt ?
_reflns_shell.percent_possible_gt ?
_reflns_shell.Rmerge_F_gt ?
_reflns_shell.Rmerge_I_gt ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_netI_over_sigmaI_all ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_CC_half ?
_reflns_shell.pdbx_R_split ?
#
_refine.aniso_B[1][1] 0.01
_refine.aniso_B[1][2] 0.00
_refine.aniso_B[1][3] -0.00
_refine.aniso_B[2][2] 0.01
_refine.aniso_B[2][3] -0.00
_refine.aniso_B[3][3] -0.03
_refine.B_iso_max ?
_refine.B_iso_mean 23.524
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc 0.953
_refine.correlation_coeff_Fo_to_Fc_free 0.938
_refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS'
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 4YS5
_refine.pdbx_refine_id 'X-ray diffraction'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.65
_refine.ls_d_res_low 19.08
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 2772
_refine.ls_number_reflns_R_free 132
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 99.73
_refine.ls_percent_reflns_R_free 4.5
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.22695
_refine.ls_R_factor_R_free 0.26294
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.22517
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details MASK
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD'
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R 0.111
_refine.pdbx_overall_ESU_R_Free 0.111
_refine.pdbx_solvent_vdw_probe_radii 1.20
_refine.pdbx_solvent_ion_probe_radii 0.80
_refine.pdbx_solvent_shrinkage_radii 0.80
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B 2.519
_refine.overall_SU_ML 0.081
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.pdbx_refine_id 'X-ray diffraction'
_refine_hist.cycle_id 1
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 163
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 14
_refine_hist.number_atoms_total 177
_refine_hist.d_res_high 1.65
_refine_hist.d_res_low 19.08
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-ray diffraction' ? 0.014 0.011 182 ? 'r_bond_refined_d' ? ?
'X-ray diffraction' ? 0.011 0.020 92 ? 'r_bond_other_d' ? ?
'X-ray diffraction' ? 1.929 1.176 279 ? 'r_angle_refined_deg' ? ?
'X-ray diffraction' ? 4.252 3.000 216 ? 'r_angle_other_deg' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_dihedral_angle_1_deg' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_dihedral_angle_2_deg' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_dihedral_angle_3_deg' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_dihedral_angle_4_deg' ? ?
'X-ray diffraction' ? 0.127 0.200 25 ? 'r_chiral_restr' ? ?
'X-ray diffraction' ? 0.025 0.020 96 ? 'r_gen_planes_refined' ? ?
'X-ray diffraction' ? 0.004 0.020 42 ? 'r_gen_planes_other' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_nbd_refined' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_nbd_other' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_nbtor_refined' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_nbtor_other' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_xyhbond_nbd_refined' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_xyhbond_nbd_other' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_metal_ion_refined' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_metal_ion_other' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_symmetry_vdw_refined' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_symmetry_vdw_other' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_symmetry_hbond_refined' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_symmetry_hbond_other' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_symmetry_metal_ion_refined' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_symmetry_metal_ion_other' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_mcbond_it' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_mcbond_other' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_mcangle_it' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_mcangle_other' ? ?
'X-ray diffraction' ? 2.843 2.368 182 ? 'r_scbond_it' ? ?
'X-ray diffraction' ? 2.837 2.367 181 ? 'r_scbond_other' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_scangle_it' ? ?
'X-ray diffraction' ? 4.153 3.580 279 ? 'r_scangle_other' ? ?
'X-ray diffraction' ? 4.977 22.513 248 ? 'r_long_range_B_refined' ? ?
'X-ray diffraction' ? 4.790 22.287 241 ? 'r_long_range_B_other' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_rigid_bond_restr' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_sphericity_free' ? ?
'X-ray diffraction' ? ? ? ? ? 'r_sphericity_bonded' ? ?
#
_refine_ls_shell.pdbx_refine_id 'X-ray diffraction'
_refine_ls_shell.d_res_high 1.65
_refine_ls_shell.d_res_low 1.691
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.number_reflns_obs ?
_refine_ls_shell.number_reflns_R_free 11
_refine_ls_shell.number_reflns_R_work 188
_refine_ls_shell.percent_reflns_obs 98.51
_refine_ls_shell.percent_reflns_R_free ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.R_factor_obs ?
_refine_ls_shell.R_factor_R_free 0.440
_refine_ls_shell.R_factor_R_free_error ?
_refine_ls_shell.R_factor_R_work 0.261
_refine_ls_shell.redundancy_reflns_all ?
_refine_ls_shell.redundancy_reflns_obs ?
_refine_ls_shell.wR_factor_all ?
_refine_ls_shell.wR_factor_obs ?
_refine_ls_shell.wR_factor_R_free ?
_refine_ls_shell.wR_factor_R_work ?
_refine_ls_shell.pdbx_total_number_of_bins_used 20
_refine_ls_shell.pdbx_phase_error ?
_refine_ls_shell.pdbx_fsc_work ?
_refine_ls_shell.pdbx_fsc_free ?
#
_struct.entry_id 4YS5
_struct.title
;DNA sequence containing 2'-Se-dC modification
;
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag ?
#
_struct_keywords.entry_id 4YS5
_struct_keywords.text 'DNA, selenium'
_struct_keywords.pdbx_keywords DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 4YS5
_struct_ref.pdbx_db_accession 4YS5
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4YS5
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 8
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 4YS5
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 8
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 8
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 2080 ?
1 MORE 6 ?
1 'SSA (A^2)' 2700 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -12.5335000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A DG 4 "O3'" ? ? ? 1_555 A CSL 5 P ? ? A DG 4 A CSL 5 1_555 ? ? ? ? ? ? ? 1.607 ? ?
covale2 covale both ? A CSL 5 "O3'" ? ? ? 1_555 A DC 6 P ? ? A CSL 5 A DC 6 1_555 ? ? ? ? ? ? ? 1.601 ? ?
hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A DT 2 A DA 7 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A DT 2 A DA 7 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A CSL 5 N3 ? ? A DG 4 A CSL 5 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A CSL 5 O2 ? ? A DG 4 A CSL 5 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A CSL 5 N4 ? ? A DG 4 A CSL 5 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A CSL 5 N3 ? ? ? 1_555 A DG 4 N1 ? ? A CSL 5 A DG 4 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A CSL 5 N4 ? ? ? 1_555 A DG 4 O6 ? ? A CSL 5 A DG 4 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A CSL 5 O2 ? ? ? 1_555 A DG 4 N2 ? ? A CSL 5 A DG 4 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 2 N3 ? ? A DA 7 A DT 2 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 2 O4 ? ? A DA 7 A DT 2 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 8_554 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
hydrog ? ?
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "C5'" A DG 1 ? ? "C4'" A DG 1 ? ? "O4'" A DG 1 ? ? 118.91 109.80 9.11 1.10 N
2 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.40 108.30 2.10 0.30 N
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
CSL P P N N 1
CSL O2P O N N 2
CSL O1P O N N 3
CSL "O5'" O N N 4
CSL "C5'" C N N 5
CSL "C4'" C N R 6
CSL "O4'" O N N 7
CSL "C1'" C N R 8
CSL N1 N N N 9
CSL C2 C N N 10
CSL O2 O N N 11
CSL N3 N N N 12
CSL C4 C N N 13
CSL N4 N N N 14
CSL C5 C N N 15
CSL C6 C N N 16
CSL "C2'" C N R 17
CSL "SE2'" SE N N 18
CSL "CA'" C N N 19
CSL "C3'" C N R 20
CSL "O3'" O N N 21
CSL O3P O N N 22
CSL HOP2 H N N 23
CSL "H5'1" H N N 24
CSL "H5'2" H N N 25
CSL "H4'" H N N 26
CSL "H1'" H N N 27
CSL HN41 H N N 28
CSL HN42 H N N 29
CSL H5 H N N 30
CSL H6 H N N 31
CSL "H2'" H N N 32
CSL "HA'1" H N N 33
CSL "HA'2" H N N 34
CSL "HA'3" H N N 35
CSL "H3'" H N N 36
CSL H3T H N N 37
CSL HOP3 H N N 38
DA OP3 O N N 39
DA P P N N 40
DA OP1 O N N 41
DA OP2 O N N 42
DA "O5'" O N N 43
DA "C5'" C N N 44
DA "C4'" C N R 45
DA "O4'" O N N 46
DA "C3'" C N S 47
DA "O3'" O N N 48
DA "C2'" C N N 49
DA "C1'" C N R 50
DA N9 N Y N 51
DA C8 C Y N 52
DA N7 N Y N 53
DA C5 C Y N 54
DA C6 C Y N 55
DA N6 N N N 56
DA N1 N Y N 57
DA C2 C Y N 58
DA N3 N Y N 59
DA C4 C Y N 60
DA HOP3 H N N 61
DA HOP2 H N N 62
DA "H5'" H N N 63
DA "H5''" H N N 64
DA "H4'" H N N 65
DA "H3'" H N N 66
DA "HO3'" H N N 67
DA "H2'" H N N 68
DA "H2''" H N N 69
DA "H1'" H N N 70
DA H8 H N N 71
DA H61 H N N 72
DA H62 H N N 73
DA H2 H N N 74
DC OP3 O N N 75
DC P P N N 76
DC OP1 O N N 77
DC OP2 O N N 78
DC "O5'" O N N 79
DC "C5'" C N N 80
DC "C4'" C N R 81
DC "O4'" O N N 82
DC "C3'" C N S 83
DC "O3'" O N N 84
DC "C2'" C N N 85
DC "C1'" C N R 86
DC N1 N N N 87
DC C2 C N N 88
DC O2 O N N 89
DC N3 N N N 90
DC C4 C N N 91
DC N4 N N N 92
DC C5 C N N 93
DC C6 C N N 94
DC HOP3 H N N 95
DC HOP2 H N N 96
DC "H5'" H N N 97
DC "H5''" H N N 98
DC "H4'" H N N 99
DC "H3'" H N N 100
DC "HO3'" H N N 101
DC "H2'" H N N 102
DC "H2''" H N N 103
DC "H1'" H N N 104
DC H41 H N N 105
DC H42 H N N 106
DC H5 H N N 107
DC H6 H N N 108
DG OP3 O N N 109
DG P P N N 110
DG OP1 O N N 111
DG OP2 O N N 112
DG "O5'" O N N 113
DG "C5'" C N N 114
DG "C4'" C N R 115
DG "O4'" O N N 116
DG "C3'" C N S 117
DG "O3'" O N N 118
DG "C2'" C N N 119
DG "C1'" C N R 120
DG N9 N Y N 121
DG C8 C Y N 122
DG N7 N Y N 123
DG C5 C Y N 124
DG C6 C N N 125
DG O6 O N N 126
DG N1 N N N 127
DG C2 C N N 128
DG N2 N N N 129
DG N3 N N N 130
DG C4 C Y N 131
DG HOP3 H N N 132
DG HOP2 H N N 133
DG "H5'" H N N 134
DG "H5''" H N N 135
DG "H4'" H N N 136
DG "H3'" H N N 137
DG "HO3'" H N N 138
DG "H2'" H N N 139
DG "H2''" H N N 140
DG "H1'" H N N 141
DG H8 H N N 142
DG H1 H N N 143
DG H21 H N N 144
DG H22 H N N 145
DT OP3 O N N 146
DT P P N N 147
DT OP1 O N N 148
DT OP2 O N N 149
DT "O5'" O N N 150
DT "C5'" C N N 151
DT "C4'" C N R 152
DT "O4'" O N N 153
DT "C3'" C N S 154
DT "O3'" O N N 155
DT "C2'" C N N 156
DT "C1'" C N R 157
DT N1 N N N 158
DT C2 C N N 159
DT O2 O N N 160
DT N3 N N N 161
DT C4 C N N 162
DT O4 O N N 163
DT C5 C N N 164
DT C7 C N N 165
DT C6 C N N 166
DT HOP3 H N N 167
DT HOP2 H N N 168
DT "H5'" H N N 169
DT "H5''" H N N 170
DT "H4'" H N N 171
DT "H3'" H N N 172
DT "HO3'" H N N 173
DT "H2'" H N N 174
DT "H2''" H N N 175
DT "H1'" H N N 176
DT H3 H N N 177
DT H71 H N N 178
DT H72 H N N 179
DT H73 H N N 180
DT H6 H N N 181
HOH O O N N 182
HOH H1 H N N 183
HOH H2 H N N 184
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CSL P O2P SING N N 1
CSL P O1P DOUB N N 2
CSL P "O5'" SING N N 3
CSL P O3P SING N N 4
CSL O2P HOP2 SING N N 5
CSL "O5'" "C5'" SING N N 6
CSL "C5'" "C4'" SING N N 7
CSL "C5'" "H5'1" SING N N 8
CSL "C5'" "H5'2" SING N N 9
CSL "C4'" "O4'" SING N N 10
CSL "C4'" "C3'" SING N N 11
CSL "C4'" "H4'" SING N N 12
CSL "O4'" "C1'" SING N N 13
CSL "C1'" N1 SING N N 14
CSL "C1'" "C2'" SING N N 15
CSL "C1'" "H1'" SING N N 16
CSL N1 C2 SING N N 17
CSL N1 C6 SING N N 18
CSL C2 O2 DOUB N N 19
CSL C2 N3 SING N N 20
CSL N3 C4 DOUB N N 21
CSL C4 N4 SING N N 22
CSL C4 C5 SING N N 23
CSL N4 HN41 SING N N 24
CSL N4 HN42 SING N N 25
CSL C5 C6 DOUB N N 26
CSL C5 H5 SING N N 27
CSL C6 H6 SING N N 28
CSL "C2'" "SE2'" SING N N 29
CSL "C2'" "C3'" SING N N 30
CSL "C2'" "H2'" SING N N 31
CSL "SE2'" "CA'" SING N N 32
CSL "CA'" "HA'1" SING N N 33
CSL "CA'" "HA'2" SING N N 34
CSL "CA'" "HA'3" SING N N 35
CSL "C3'" "O3'" SING N N 36
CSL "C3'" "H3'" SING N N 37
CSL "O3'" H3T SING N N 38
CSL O3P HOP3 SING N N 39
DA OP3 P SING N N 1
DA OP3 HOP3 SING N N 2
DA P OP1 DOUB N N 3
DA P OP2 SING N N 4
DA P "O5'" SING N N 5
DA OP2 HOP2 SING N N 6
DA "O5'" "C5'" SING N N 7
DA "C5'" "C4'" SING N N 8
DA "C5'" "H5'" SING N N 9
DA "C5'" "H5''" SING N N 10
DA "C4'" "O4'" SING N N 11
DA "C4'" "C3'" SING N N 12
DA "C4'" "H4'" SING N N 13
DA "O4'" "C1'" SING N N 14
DA "C3'" "O3'" SING N N 15
DA "C3'" "C2'" SING N N 16
DA "C3'" "H3'" SING N N 17
DA "O3'" "HO3'" SING N N 18
DA "C2'" "C1'" SING N N 19
DA "C2'" "H2'" SING N N 20
DA "C2'" "H2''" SING N N 21
DA "C1'" N9 SING N N 22
DA "C1'" "H1'" SING N N 23
DA N9 C8 SING Y N 24
DA N9 C4 SING Y N 25
DA C8 N7 DOUB Y N 26
DA C8 H8 SING N N 27
DA N7 C5 SING Y N 28
DA C5 C6 SING Y N 29
DA C5 C4 DOUB Y N 30
DA C6 N6 SING N N 31
DA C6 N1 DOUB Y N 32
DA N6 H61 SING N N 33
DA N6 H62 SING N N 34
DA N1 C2 SING Y N 35
DA C2 N3 DOUB Y N 36
DA C2 H2 SING N N 37
DA N3 C4 SING Y N 38
DC OP3 P SING N N 1
DC OP3 HOP3 SING N N 2
DC P OP1 DOUB N N 3
DC P OP2 SING N N 4
DC P "O5'" SING N N 5
DC OP2 HOP2 SING N N 6
DC "O5'" "C5'" SING N N 7
DC "C5'" "C4'" SING N N 8
DC "C5'" "H5'" SING N N 9
DC "C5'" "H5''" SING N N 10
DC "C4'" "O4'" SING N N 11
DC "C4'" "C3'" SING N N 12
DC "C4'" "H4'" SING N N 13
DC "O4'" "C1'" SING N N 14
DC "C3'" "O3'" SING N N 15
DC "C3'" "C2'" SING N N 16
DC "C3'" "H3'" SING N N 17
DC "O3'" "HO3'" SING N N 18
DC "C2'" "C1'" SING N N 19
DC "C2'" "H2'" SING N N 20
DC "C2'" "H2''" SING N N 21
DC "C1'" N1 SING N N 22
DC "C1'" "H1'" SING N N 23
DC N1 C2 SING N N 24
DC N1 C6 SING N N 25
DC C2 O2 DOUB N N 26
DC C2 N3 SING N N 27
DC N3 C4 DOUB N N 28
DC C4 N4 SING N N 29
DC C4 C5 SING N N 30
DC N4 H41 SING N N 31
DC N4 H42 SING N N 32
DC C5 C6 DOUB N N 33
DC C5 H5 SING N N 34
DC C6 H6 SING N N 35
DG OP3 P SING N N 1
DG OP3 HOP3 SING N N 2
DG P OP1 DOUB N N 3
DG P OP2 SING N N 4
DG P "O5'" SING N N 5
DG OP2 HOP2 SING N N 6
DG "O5'" "C5'" SING N N 7
DG "C5'" "C4'" SING N N 8
DG "C5'" "H5'" SING N N 9
DG "C5'" "H5''" SING N N 10
DG "C4'" "O4'" SING N N 11
DG "C4'" "C3'" SING N N 12
DG "C4'" "H4'" SING N N 13
DG "O4'" "C1'" SING N N 14
DG "C3'" "O3'" SING N N 15
DG "C3'" "C2'" SING N N 16
DG "C3'" "H3'" SING N N 17
DG "O3'" "HO3'" SING N N 18
DG "C2'" "C1'" SING N N 19
DG "C2'" "H2'" SING N N 20
DG "C2'" "H2''" SING N N 21
DG "C1'" N9 SING N N 22
DG "C1'" "H1'" SING N N 23
DG N9 C8 SING Y N 24
DG N9 C4 SING Y N 25
DG C8 N7 DOUB Y N 26
DG C8 H8 SING N N 27
DG N7 C5 SING Y N 28
DG C5 C6 SING N N 29
DG C5 C4 DOUB Y N 30
DG C6 O6 DOUB N N 31
DG C6 N1 SING N N 32
DG N1 C2 SING N N 33
DG N1 H1 SING N N 34
DG C2 N2 SING N N 35
DG C2 N3 DOUB N N 36
DG N2 H21 SING N N 37
DG N2 H22 SING N N 38
DG N3 C4 SING N N 39
DT OP3 P SING N N 1
DT OP3 HOP3 SING N N 2
DT P OP1 DOUB N N 3
DT P OP2 SING N N 4
DT P "O5'" SING N N 5
DT OP2 HOP2 SING N N 6
DT "O5'" "C5'" SING N N 7
DT "C5'" "C4'" SING N N 8
DT "C5'" "H5'" SING N N 9
DT "C5'" "H5''" SING N N 10
DT "C4'" "O4'" SING N N 11
DT "C4'" "C3'" SING N N 12
DT "C4'" "H4'" SING N N 13
DT "O4'" "C1'" SING N N 14
DT "C3'" "O3'" SING N N 15
DT "C3'" "C2'" SING N N 16
DT "C3'" "H3'" SING N N 17
DT "O3'" "HO3'" SING N N 18
DT "C2'" "C1'" SING N N 19
DT "C2'" "H2'" SING N N 20
DT "C2'" "H2''" SING N N 21
DT "C1'" N1 SING N N 22
DT "C1'" "H1'" SING N N 23
DT N1 C2 SING N N 24
DT N1 C6 SING N N 25
DT C2 O2 DOUB N N 26
DT C2 N3 SING N N 27
DT N3 C4 SING N N 28
DT N3 H3 SING N N 29
DT C4 O4 DOUB N N 30
DT C4 C5 SING N N 31
DT C5 C7 SING N N 32
DT C5 C6 DOUB N N 33
DT C7 H71 SING N N 34
DT C7 H72 SING N N 35
DT C7 H73 SING N N 36
DT C6 H6 SING N N 37
HOH O H1 SING N N 1
HOH O H2 SING N N 2
#
loop_
_ndb_struct_conf_na.entry_id
_ndb_struct_conf_na.feature
4YS5 'a-form double helix'
4YS5 'mismatched base pair'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DG 1 1_555 A DC 8 8_554 -0.427 -0.098 -0.144 -14.714 -9.043 2.577 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1
1 A DT 2 1_555 A DA 7 8_554 -0.036 -0.140 0.257 -3.417 -8.392 1.985 2 A_DT2:DA7_A A 2 ? A 7 ? 20 1
1 A DG 3 1_555 A DC 6 8_554 -0.189 -0.211 0.066 2.522 -7.928 -1.338 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1
1 A DG 4 1_555 A CSL 5 8_554 -0.338 -0.241 0.227 -1.094 -16.264 0.658 4 A_DG4:CSL5_A A 4 ? A 5 ? 19 1
1 A CSL 5 1_555 A DG 4 8_554 0.338 -0.241 0.227 1.094 -16.264 0.658 5 A_CSL5:DG4_A A 5 ? A 4 ? 19 1
1 A DC 6 1_555 A DG 3 8_554 0.189 -0.211 0.066 -2.522 -7.928 -1.338 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1
1 A DA 7 1_555 A DT 2 8_554 0.036 -0.140 0.257 3.417 -8.392 1.985 7 A_DA7:DT2_A A 7 ? A 2 ? 20 1
1 A DC 8 1_555 A DG 1 8_554 0.427 -0.098 -0.144 14.714 -9.043 2.577 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DG 1 1_555 A DC 8 8_554 A DT 2 1_555 A DA 7 8_554 -0.487 -1.130 3.083 -3.071 5.743 32.011 -2.926 0.377 2.875 10.280 5.498 32.650 1 AA_DG1DT2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ?
1 A DT 2 1_555 A DA 7 8_554 A DG 3 1_555 A DC 6 8_554 -0.266 -1.317 3.049 0.553 8.011 30.618 -3.723 0.579 2.624 14.853 -1.025 31.629 2 AA_DT2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ?
1 A DG 3 1_555 A DC 6 8_554 A DG 4 1_555 A CSL 5 8_554 0.474 -1.539 3.230 -0.651 7.475 32.183 -3.891 -0.936 2.802 13.260 1.155 33.023 3 AA_DG3DG4:CSL5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ?
1 A DG 4 1_555 A CSL 5 8_554 A CSL 5 1_555 A DG 4 8_554 0.000 -1.836 3.223 0.000 3.992 34.947 -3.607 0.000 3.001 6.621 0.000 35.167 4 AA_DG4CSL5:DG4CSL5_AA A 4 ? A 5 ? A 5 ? A 4 ?
1 A CSL 5 1_555 A DG 4 8_554 A DC 6 1_555 A DG 3 8_554 -0.474 -1.539 3.230 0.651 7.475 32.183 -3.891 0.936 2.802 13.260 -1.155 33.023 5 AA_CSL5DC6:DG3DG4_AA A 5 ? A 4 ? A 6 ? A 3 ?
1 A DC 6 1_555 A DG 3 8_554 A DA 7 1_555 A DT 2 8_554 0.266 -1.317 3.049 -0.553 8.011 30.618 -3.723 -0.579 2.624 14.853 1.025 31.629 6 AA_DC6DA7:DT2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ?
1 A DA 7 1_555 A DT 2 8_554 A DC 8 1_555 A DG 1 8_554 0.487 -1.130 3.083 3.071 5.743 32.011 -2.926 -0.377 2.875 10.280 -5.498 32.650 7 AA_DA7DC8:DG1DT2_AA A 7 ? A 2 ? A 8 ? A 1 ?
#
_atom_sites.entry_id 4YS5
_atom_sites.fract_transf_matrix[1][1] 0.024026
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] -0.000000
_atom_sites.fract_transf_matrix[2][2] 0.024026
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] -0.000000
_atom_sites.fract_transf_matrix[3][3] 0.039893
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
P
SE
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
_atom_site.pdbx_label_index
ATOM 1 O "O5'" . DG A 1 1 ? -1.012 -6.856 -11.172 1.00 28.94 ? 1 DG A "O5'" 1 1
ATOM 2 C "C5'" . DG A 1 1 ? -2.318 -6.675 -10.635 1.00 26.33 ? 1 DG A "C5'" 1 1
ATOM 3 C "C4'" . DG A 1 1 ? -2.817 -7.992 -10.107 1.00 22.64 ? 1 DG A "C4'" 1 1
ATOM 4 O "O4'" . DG A 1 1 ? -2.945 -9.112 -11.022 1.00 22.40 ? 1 DG A "O4'" 1 1
ATOM 5 C "C3'" . DG A 1 1 ? -2.123 -8.534 -8.850 1.00 22.89 ? 1 DG A "C3'" 1 1
ATOM 6 O "O3'" . DG A 1 1 ? -2.588 -7.979 -7.630 1.00 25.32 ? 1 DG A "O3'" 1 1
ATOM 7 C "C2'" . DG A 1 1 ? -2.591 -9.962 -8.827 1.00 21.46 ? 1 DG A "C2'" 1 1
ATOM 8 C "C1'" . DG A 1 1 ? -2.608 -10.309 -10.306 1.00 20.20 ? 1 DG A "C1'" 1 1
ATOM 9 N N9 . DG A 1 1 ? -1.345 -10.807 -10.835 1.00 19.57 ? 1 DG A N9 1 1
ATOM 10 C C8 . DG A 1 1 ? -0.480 -10.170 -11.689 1.00 19.21 ? 1 DG A C8 1 1
ATOM 11 N N7 . DG A 1 1 ? 0.548 -10.908 -12.017 1.00 19.79 ? 1 DG A N7 1 1
ATOM 12 C C5 . DG A 1 1 ? 0.389 -12.069 -11.272 1.00 19.87 ? 1 DG A C5 1 1
ATOM 13 C C6 . DG A 1 1 ? 1.167 -13.264 -11.241 1.00 19.38 ? 1 DG A C6 1 1
ATOM 14 O O6 . DG A 1 1 ? 2.235 -13.510 -11.817 1.00 20.63 ? 1 DG A O6 1 1
ATOM 15 N N1 . DG A 1 1 ? 0.622 -14.203 -10.376 1.00 21.13 ? 1 DG A N1 1 1
ATOM 16 C C2 . DG A 1 1 ? -0.537 -14.055 -9.678 1.00 21.18 ? 1 DG A C2 1 1
ATOM 17 N N2 . DG A 1 1 ? -0.903 -15.109 -8.923 1.00 23.04 ? 1 DG A N2 1 1
ATOM 18 N N3 . DG A 1 1 ? -1.300 -12.972 -9.724 1.00 19.28 ? 1 DG A N3 1 1
ATOM 19 C C4 . DG A 1 1 ? -0.754 -12.005 -10.506 1.00 18.90 ? 1 DG A C4 1 1
ATOM 20 P P . DT A 1 2 ? -1.548 -7.558 -6.473 1.00 28.28 ? 2 DT A P 1 2
ATOM 21 O OP1 . DT A 1 2 ? -2.339 -6.657 -5.495 1.00 28.93 ? 2 DT A OP1 1 2
ATOM 22 O OP2 . DT A 1 2 ? -0.367 -6.988 -7.138 1.00 24.72 ? 2 DT A OP2 1 2
ATOM 23 O "O5'" . DT A 1 2 ? -1.332 -8.913 -5.678 1.00 27.87 ? 2 DT A "O5'" 1 2
ATOM 24 C "C5'" . DT A 1 2 ? -2.407 -9.527 -4.973 1.00 26.51 ? 2 DT A "C5'" 1 2
ATOM 25 C "C4'" . DT A 1 2 ? -2.084 -10.941 -4.585 1.00 27.08 ? 2 DT A "C4'" 1 2
ATOM 26 O "O4'" . DT A 1 2 ? -1.891 -11.739 -5.754 1.00 24.78 ? 2 DT A "O4'" 1 2
ATOM 27 C "C3'" . DT A 1 2 ? -0.770 -11.062 -3.826 1.00 32.16 ? 2 DT A "C3'" 1 2
ATOM 28 O "O3'" . DT A 1 2 ? -0.883 -10.703 -2.443 1.00 33.67 ? 2 DT A "O3'" 1 2
ATOM 29 C "C2'" . DT A 1 2 ? -0.438 -12.514 -4.020 1.00 28.92 ? 2 DT A "C2'" 1 2
ATOM 30 C "C1'" . DT A 1 2 ? -0.796 -12.654 -5.472 1.00 28.17 ? 2 DT A "C1'" 1 2
ATOM 31 N N1 . DT A 1 2 ? 0.326 -12.391 -6.398 1.00 25.98 ? 2 DT A N1 1 2
ATOM 32 C C2 . DT A 1 2 ? 1.205 -13.437 -6.554 1.00 22.64 ? 2 DT A C2 1 2
ATOM 33 O O2 . DT A 1 2 ? 1.097 -14.494 -5.945 1.00 26.73 ? 2 DT A O2 1 2
ATOM 34 N N3 . DT A 1 2 ? 2.182 -13.223 -7.497 1.00 22.69 ? 2 DT A N3 1 2
ATOM 35 C C4 . DT A 1 2 ? 2.398 -12.077 -8.232 1.00 19.64 ? 2 DT A C4 1 2
ATOM 36 O O4 . DT A 1 2 ? 3.336 -12.031 -9.023 1.00 21.65 ? 2 DT A O4 1 2
ATOM 37 C C5 . DT A 1 2 ? 1.479 -10.992 -7.968 1.00 21.00 ? 2 DT A C5 1 2
ATOM 38 C C7 . DT A 1 2 ? 1.618 -9.714 -8.735 1.00 21.66 ? 2 DT A C7 1 2
ATOM 39 C C6 . DT A 1 2 ? 0.510 -11.200 -7.065 1.00 22.03 ? 2 DT A C6 1 2
ATOM 40 P P . DG A 1 3 ? 0.392 -10.071 -1.657 1.00 35.90 ? 3 DG A P 1 3
ATOM 41 O OP1 . DG A 1 3 ? -0.137 -9.636 -0.336 1.00 47.08 ? 3 DG A OP1 1 3
ATOM 42 O OP2 . DG A 1 3 ? 1.126 -9.103 -2.505 1.00 31.67 ? 3 DG A OP2 1 3
ATOM 43 O "O5'" . DG A 1 3 ? 1.341 -11.319 -1.396 1.00 32.26 ? 3 DG A "O5'" 1 3
ATOM 44 C "C5'" . DG A 1 3 ? 0.844 -12.384 -0.605 1.00 33.34 ? 3 DG A "C5'" 1 3
ATOM 45 C "C4'" . DG A 1 3 ? 1.838 -13.515 -0.592 1.00 29.55 ? 3 DG A "C4'" 1 3
ATOM 46 O "O4'" . DG A 1 3 ? 1.811 -14.101 -1.911 1.00 27.81 ? 3 DG A "O4'" 1 3
ATOM 47 C "C3'" . DG A 1 3 ? 3.314 -13.177 -0.355 1.00 29.68 ? 3 DG A "C3'" 1 3
ATOM 48 O "O3'" . DG A 1 3 ? 3.741 -12.996 1.022 1.00 31.28 ? 3 DG A "O3'" 1 3
ATOM 49 C "C2'" . DG A 1 3 ? 3.954 -14.415 -0.955 1.00 27.58 ? 3 DG A "C2'" 1 3
ATOM 50 C "C1'" . DG A 1 3 ? 3.103 -14.609 -2.217 1.00 25.83 ? 3 DG A "C1'" 1 3
ATOM 51 N N9 . DG A 1 3 ? 3.625 -13.897 -3.386 1.00 23.05 ? 3 DG A N9 1 3
ATOM 52 C C8 . DG A 1 3 ? 3.316 -12.636 -3.827 1.00 23.62 ? 3 DG A C8 1 3
ATOM 53 N N7 . DG A 1 3 ? 4.029 -12.264 -4.854 1.00 20.20 ? 3 DG A N7 1 3
ATOM 54 C C5 . DG A 1 3 ? 4.832 -13.361 -5.132 1.00 19.92 ? 3 DG A C5 1 3
ATOM 55 C C6 . DG A 1 3 ? 5.803 -13.561 -6.148 1.00 20.33 ? 3 DG A C6 1 3
ATOM 56 O O6 . DG A 1 3 ? 6.159 -12.783 -7.046 1.00 20.80 ? 3 DG A O6 1 3
ATOM 57 N N1 . DG A 1 3 ? 6.426 -14.800 -6.021 1.00 21.25 ? 3 DG A N1 1 3
ATOM 58 C C2 . DG A 1 3 ? 6.159 -15.726 -5.050 1.00 20.52 ? 3 DG A C2 1 3
ATOM 59 N N2 . DG A 1 3 ? 6.893 -16.853 -5.080 1.00 19.25 ? 3 DG A N2 1 3
ATOM 60 N N3 . DG A 1 3 ? 5.256 -15.555 -4.105 1.00 20.77 ? 3 DG A N3 1 3
ATOM 61 C C4 . DG A 1 3 ? 4.620 -14.364 -4.218 1.00 22.22 ? 3 DG A C4 1 3
ATOM 62 P P . DG A 1 4 ? 5.088 -12.161 1.420 1.00 31.76 ? 4 DG A P 1 4
ATOM 63 O OP1 . DG A 1 4 ? 5.099 -12.000 2.925 1.00 38.59 ? 4 DG A OP1 1 4
ATOM 64 O OP2 . DG A 1 4 ? 5.196 -10.938 0.618 1.00 36.31 ? 4 DG A OP2 1 4
ATOM 65 O "O5'" . DG A 1 4 ? 6.286 -13.122 0.969 1.00 32.11 ? 4 DG A "O5'" 1 4
ATOM 66 C "C5'" . DG A 1 4 ? 6.362 -14.502 1.382 1.00 33.09 ? 4 DG A "C5'" 1 4
ATOM 67 C "C4'" . DG A 1 4 ? 7.474 -15.249 0.670 1.00 36.29 ? 4 DG A "C4'" 1 4
ATOM 68 O "O4'" . DG A 1 4 ? 7.066 -15.461 -0.700 1.00 33.97 ? 4 DG A "O4'" 1 4
ATOM 69 C "C3'" . DG A 1 4 ? 8.872 -14.617 0.573 1.00 34.04 ? 4 DG A "C3'" 1 4
ATOM 70 O "O3'" . DG A 1 4 ? 9.779 -14.843 1.698 1.00 33.77 ? 4 DG A "O3'" 1 4
ATOM 71 C "C2'" . DG A 1 4 ? 9.428 -15.301 -0.665 1.00 30.51 ? 4 DG A "C2'" 1 4
ATOM 72 C "C1'" . DG A 1 4 ? 8.189 -15.403 -1.559 1.00 27.76 ? 4 DG A "C1'" 1 4
ATOM 73 N N9 . DG A 1 4 ? 8.036 -14.235 -2.426 1.00 21.56 ? 4 DG A N9 1 4
ATOM 74 C C8 . DG A 1 4 ? 7.186 -13.164 -2.316 1.00 20.40 ? 4 DG A C8 1 4
ATOM 75 N N7 . DG A 1 4 ? 7.398 -12.255 -3.226 1.00 20.71 ? 4 DG A N7 1 4
ATOM 76 C C5 . DG A 1 4 ? 8.368 -12.809 -4.044 1.00 19.78 ? 4 DG A C5 1 4
ATOM 77 C C6 . DG A 1 4 ? 8.977 -12.300 -5.212 1.00 16.35 ? 4 DG A C6 1 4
ATOM 78 O O6 . DG A 1 4 ? 8.734 -11.250 -5.800 1.00 19.59 ? 4 DG A O6 1 4
ATOM 79 N N1 . DG A 1 4 ? 9.968 -13.150 -5.689 1.00 17.49 ? 4 DG A N1 1 4
ATOM 80 C C2 . DG A 1 4 ? 10.296 -14.361 -5.131 1.00 17.78 ? 4 DG A C2 1 4
ATOM 81 N N2 . DG A 1 4 ? 11.278 -15.030 -5.709 1.00 17.06 ? 4 DG A N2 1 4
ATOM 82 N N3 . DG A 1 4 ? 9.717 -14.857 -4.043 1.00 20.55 ? 4 DG A N3 1 4
ATOM 83 C C4 . DG A 1 4 ? 8.799 -14.013 -3.538 1.00 20.08 ? 4 DG A C4 1 4
HETATM 84 P P . CSL A 1 5 ? 10.854 -13.716 2.095 1.00 37.01 ? 5 CSL A P 1 5
HETATM 85 O O2P . CSL A 1 5 ? 11.448 -14.172 3.370 1.00 43.88 ? 5 CSL A O2P 1 5
HETATM 86 O O1P . CSL A 1 5 ? 10.295 -12.350 1.929 1.00 36.16 ? 5 CSL A O1P 1 5
HETATM 87 O "O5'" . CSL A 1 5 ? 11.985 -13.770 0.955 1.00 28.38 ? 5 CSL A "O5'" 1 5
HETATM 88 C "C5'" . CSL A 1 5 ? 12.799 -14.916 0.861 1.00 21.98 ? 5 CSL A "C5'" 1 5
HETATM 89 C "C4'" . CSL A 1 5 ? 13.552 -14.976 -0.416 1.00 21.70 ? 5 CSL A "C4'" 1 5
HETATM 90 O "O4'" . CSL A 1 5 ? 12.680 -14.841 -1.572 1.00 23.21 ? 5 CSL A "O4'" 1 5
HETATM 91 C "C1'" . CSL A 1 5 ? 13.383 -14.140 -2.604 1.00 20.63 ? 5 CSL A "C1'" 1 5
HETATM 92 N N1 . CSL A 1 5 ? 12.690 -12.880 -2.886 1.00 18.97 ? 5 CSL A N1 1 5
HETATM 93 C C2 . CSL A 1 5 ? 12.999 -12.224 -4.066 1.00 15.41 ? 5 CSL A C2 1 5
HETATM 94 O O2 . CSL A 1 5 ? 13.879 -12.689 -4.789 1.00 16.84 ? 5 CSL A O2 1 5
HETATM 95 N N3 . CSL A 1 5 ? 12.328 -11.095 -4.393 1.00 18.34 ? 5 CSL A N3 1 5
HETATM 96 C C4 . CSL A 1 5 ? 11.382 -10.628 -3.586 1.00 16.50 ? 5 CSL A C4 1 5
HETATM 97 N N4 . CSL A 1 5 ? 10.712 -9.560 -3.976 1.00 21.47 ? 5 CSL A N4 1 5
HETATM 98 C C5 . CSL A 1 5 ? 11.050 -11.271 -2.366 1.00 20.55 ? 5 CSL A C5 1 5
HETATM 99 C C6 . CSL A 1 5 ? 11.730 -12.379 -2.052 1.00 19.66 ? 5 CSL A C6 1 5
HETATM 100 C "C2'" . CSL A 1 5 ? 14.824 -13.975 -2.112 1.00 21.43 ? 5 CSL A "C2'" 1 5
HETATM 101 SE "SE2'" . CSL A 1 5 ? 15.886 -15.540 -2.665 1.00 31.57 ? 5 CSL A "SE2'" 1 5
HETATM 102 C "CA'" . CSL A 1 5 ? 16.095 -15.233 -4.612 1.00 21.71 ? 5 CSL A "CA'" 1 5
HETATM 103 C "C3'" . CSL A 1 5 ? 14.601 -13.891 -0.614 1.00 20.72 ? 5 CSL A "C3'" 1 5
HETATM 104 O "O3'" . CSL A 1 5 ? 15.759 -14.238 0.121 1.00 24.40 ? 5 CSL A "O3'" 1 5
ATOM 105 P P . DC A 1 6 ? 16.728 -13.099 0.692 1.00 23.91 ? 6 DC A P 1 6
ATOM 106 O OP1 . DC A 1 6 ? 17.792 -13.760 1.463 1.00 25.79 ? 6 DC A OP1 1 6
ATOM 107 O OP2 . DC A 1 6 ? 15.942 -11.972 1.220 1.00 23.20 ? 6 DC A OP2 1 6
ATOM 108 O "O5'" . DC A 1 6 ? 17.423 -12.465 -0.581 1.00 20.59 ? 6 DC A "O5'" 1 6
ATOM 109 C "C5'" . DC A 1 6 ? 18.515 -13.094 -1.202 1.00 20.72 ? 6 DC A "C5'" 1 6
ATOM 110 C "C4'" . DC A 1 6 ? 18.880 -12.339 -2.460 1.00 21.12 ? 6 DC A "C4'" 1 6
ATOM 111 O "O4'" . DC A 1 6 ? 17.775 -12.266 -3.386 1.00 22.49 ? 6 DC A "O4'" 1 6
ATOM 112 C "C3'" . DC A 1 6 ? 19.295 -10.889 -2.284 1.00 22.38 ? 6 DC A "C3'" 1 6
ATOM 113 O "O3'" . DC A 1 6 ? 20.584 -10.784 -1.671 1.00 25.03 ? 6 DC A "O3'" 1 6
ATOM 114 C "C2'" . DC A 1 6 ? 19.191 -10.398 -3.719 1.00 20.27 ? 6 DC A "C2'" 1 6
ATOM 115 C "C1'" . DC A 1 6 ? 17.885 -11.060 -4.126 1.00 20.07 ? 6 DC A "C1'" 1 6
ATOM 116 N N1 . DC A 1 6 ? 16.694 -10.224 -3.848 1.00 18.40 ? 6 DC A N1 1 6
ATOM 117 C C2 . DC A 1 6 ? 16.397 -9.213 -4.766 1.00 17.73 ? 6 DC A C2 1 6
ATOM 118 O O2 . DC A 1 6 ? 17.196 -8.997 -5.699 1.00 19.76 ? 6 DC A O2 1 6
ATOM 119 N N3 . DC A 1 6 ? 15.301 -8.451 -4.585 1.00 16.69 ? 6 DC A N3 1 6
ATOM 120 C C4 . DC A 1 6 ? 14.490 -8.690 -3.561 1.00 14.81 ? 6 DC A C4 1 6
ATOM 121 N N4 . DC A 1 6 ? 13.434 -7.908 -3.424 1.00 18.07 ? 6 DC A N4 1 6
ATOM 122 C C5 . DC A 1 6 ? 14.774 -9.700 -2.590 1.00 17.28 ? 6 DC A C5 1 6
ATOM 123 C C6 . DC A 1 6 ? 15.878 -10.438 -2.770 1.00 16.75 ? 6 DC A C6 1 6
ATOM 124 P P . DA A 1 7 ? 21.016 -9.450 -0.892 1.00 24.85 ? 7 DA A P 1 7
ATOM 125 O OP1 . DA A 1 7 ? 22.433 -9.642 -0.353 1.00 29.89 ? 7 DA A OP1 1 7
ATOM 126 O OP2 . DA A 1 7 ? 19.923 -8.997 0.057 1.00 23.33 ? 7 DA A OP2 1 7
ATOM 127 O "O5'" . DA A 1 7 ? 21.086 -8.354 -2.024 1.00 21.70 ? 7 DA A "O5'" 1 7
ATOM 128 C "C5'" . DA A 1 7 ? 22.074 -8.428 -3.050 1.00 20.29 ? 7 DA A "C5'" 1 7
ATOM 129 C "C4'" . DA A 1 7 ? 21.828 -7.308 -4.028 1.00 21.86 ? 7 DA A "C4'" 1 7
ATOM 130 O "O4'" . DA A 1 7 ? 20.515 -7.440 -4.619 1.00 21.80 ? 7 DA A "O4'" 1 7
ATOM 131 C "C3'" . DA A 1 7 ? 21.849 -5.909 -3.435 1.00 22.33 ? 7 DA A "C3'" 1 7
ATOM 132 O "O3'" . DA A 1 7 ? 23.198 -5.438 -3.342 1.00 26.06 ? 7 DA A "O3'" 1 7
ATOM 133 C "C2'" . DA A 1 7 ? 21.002 -5.115 -4.398 1.00 21.53 ? 7 DA A "C2'" 1 7
ATOM 134 C "C1'" . DA A 1 7 ? 19.956 -6.143 -4.816 1.00 19.66 ? 7 DA A "C1'" 1 7
ATOM 135 N N9 . DA A 1 7 ? 18.732 -6.045 -4.020 1.00 17.48 ? 7 DA A N9 1 7
ATOM 136 C C8 . DA A 1 7 ? 18.291 -6.798 -2.956 1.00 16.11 ? 7 DA A C8 1 7
ATOM 137 N N7 . DA A 1 7 ? 17.110 -6.449 -2.517 1.00 16.63 ? 7 DA A N7 1 7
ATOM 138 C C5 . DA A 1 7 ? 16.707 -5.466 -3.411 1.00 16.71 ? 7 DA A C5 1 7
ATOM 139 C C6 . DA A 1 7 ? 15.521 -4.715 -3.527 1.00 17.58 ? 7 DA A C6 1 7
ATOM 140 N N6 . DA A 1 7 ? 14.496 -4.841 -2.702 1.00 17.24 ? 7 DA A N6 1 7
ATOM 141 N N1 . DA A 1 7 ? 15.451 -3.804 -4.515 1.00 19.60 ? 7 DA A N1 1 7
ATOM 142 C C2 . DA A 1 7 ? 16.500 -3.662 -5.334 1.00 19.40 ? 7 DA A C2 1 7
ATOM 143 N N3 . DA A 1 7 ? 17.662 -4.315 -5.338 1.00 18.20 ? 7 DA A N3 1 7
ATOM 144 C C4 . DA A 1 7 ? 17.689 -5.231 -4.359 1.00 17.30 ? 7 DA A C4 1 7
ATOM 145 P P . DC A 1 8 ? 23.629 -4.398 -2.189 1.00 27.52 ? 8 DC A P 1 8
ATOM 146 O OP1 . DC A 1 8 ? 25.086 -4.171 -2.342 1.00 30.64 ? 8 DC A OP1 1 8
ATOM 147 O OP2 . DC A 1 8 ? 23.074 -4.878 -0.937 1.00 29.36 ? 8 DC A OP2 1 8
ATOM 148 O "O5'" . DC A 1 8 ? 22.906 -3.062 -2.557 1.00 22.98 ? 8 DC A "O5'" 1 8
ATOM 149 C "C5'" . DC A 1 8 ? 23.199 -2.353 -3.770 1.00 24.56 ? 8 DC A "C5'" 1 8
ATOM 150 C "C4'" . DC A 1 8 ? 22.228 -1.221 -3.954 1.00 29.65 ? 8 DC A "C4'" 1 8
ATOM 151 O "O4'" . DC A 1 8 ? 20.949 -1.832 -4.199 1.00 28.14 ? 8 DC A "O4'" 1 8
ATOM 152 C "C3'" . DC A 1 8 ? 22.023 -0.351 -2.715 1.00 34.04 ? 8 DC A "C3'" 1 8
ATOM 153 O "O3'" . DC A 1 8 ? 22.843 0.812 -2.804 1.00 39.96 ? 8 DC A "O3'" 1 8
ATOM 154 C "C2'" . DC A 1 8 ? 20.591 0.109 -2.861 1.00 33.81 ? 8 DC A "C2'" 1 8
ATOM 155 C "C1'" . DC A 1 8 ? 19.929 -1.009 -3.658 1.00 30.32 ? 8 DC A "C1'" 1 8
ATOM 156 N N1 . DC A 1 8 ? 19.024 -1.804 -2.808 1.00 23.94 ? 8 DC A N1 1 8
ATOM 157 C C2 . DC A 1 8 ? 17.706 -1.396 -2.855 1.00 22.19 ? 8 DC A C2 1 8
ATOM 158 O O2 . DC A 1 8 ? 17.396 -0.518 -3.652 1.00 25.25 ? 8 DC A O2 1 8
ATOM 159 N N3 . DC A 1 8 ? 16.795 -1.976 -2.056 1.00 20.18 ? 8 DC A N3 1 8
ATOM 160 C C4 . DC A 1 8 ? 17.171 -2.911 -1.190 1.00 19.11 ? 8 DC A C4 1 8
ATOM 161 N N4 . DC A 1 8 ? 16.225 -3.458 -0.432 1.00 19.75 ? 8 DC A N4 1 8
ATOM 162 C C5 . DC A 1 8 ? 18.527 -3.354 -1.099 1.00 19.44 ? 8 DC A C5 1 8
ATOM 163 C C6 . DC A 1 8 ? 19.423 -2.738 -1.896 1.00 20.39 ? 8 DC A C6 1 8
HETATM 164 O O . HOH B 2 . ? -0.245 -6.932 -13.762 1.00 35.35 ? 101 HOH A O 1 101
HETATM 165 O O . HOH B 2 . ? 2.564 -9.676 -13.338 1.00 32.03 ? 102 HOH A O 1 102
HETATM 166 O O . HOH B 2 . ? 16.901 -5.416 1.311 1.00 26.52 ? 103 HOH A O 1 103
HETATM 167 O O . HOH B 2 . ? 19.549 -3.368 -7.082 1.00 30.05 ? 104 HOH A O 1 104
HETATM 168 O O . HOH B 2 . ? 4.330 -12.027 -12.842 1.00 33.22 ? 105 HOH A O 1 105
HETATM 169 O O . HOH B 2 . ? 6.011 -9.984 -7.109 1.00 33.79 ? 106 HOH A O 1 106
HETATM 170 O O . HOH B 2 . ? 12.025 -8.105 -0.996 1.00 30.60 ? 107 HOH A O 1 107
HETATM 171 O O . HOH B 2 . ? 3.933 -9.538 -5.602 1.00 35.58 ? 108 HOH A O 1 108
HETATM 172 O O . HOH B 2 . ? -2.530 -3.949 -6.380 1.00 38.99 ? 109 HOH A O 1 109
HETATM 173 O O . HOH B 2 . ? 18.469 -16.486 0.941 1.00 31.58 ? 110 HOH A O 1 110
HETATM 174 O O . HOH B 2 . ? 19.534 -6.232 0.946 1.00 31.48 ? 111 HOH A O 1 111
HETATM 175 O O . HOH B 2 . ? 6.279 -9.740 -4.434 1.00 18.93 ? 112 HOH A O 1 112
HETATM 176 O O . HOH B 2 . ? 13.876 -6.403 -0.171 1.00 32.78 ? 113 HOH A O 1 113
HETATM 177 O O . HOH B 2 . ? 28.431 -5.519 -4.173 1.00 18.54 ? 114 HOH A O 1 114
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