data_wwPDB_remediated_restraints_file_for_PDB_entry_2rny # This wwPDB archive file contains, for PDB entry 2rny: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2rny _Entry.Title "wwPDB remediated NMR restraints for PDB entry 2rny" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 2rny" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2rny _Assembly.ID 1 _Assembly.Name 2rny _Assembly.Number_of_components 2 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 16025.4186 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "CREB binding protein" 1 $CREB_binding_protein A . no . . . . . . rr_2rny 1 2 "Histone H4" 2 $Histone_H4 B . no . . . . . . rr_2rny 1 stop_ save_ save_CREB_binding_protein _Entity.Sf_category entity _Entity.Sf_framecode CREB_binding_protein _Entity.Entry_ID rr_2rny _Entity.ID 1 _Entity.Name CREB_binding_protein _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; GSHMRKKIFKPEELRQALMP TLEALYRQDPESLPFRQPVD PQLLGIPDYFDIVKNPMDLS TIKRKLDTGQYQEPWQYVDD VWLMFNNAWLYNRKTSRVYK FCSKLAEVFEQEIDPVMQSL G ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 121 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 14401.5416 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . GLY . rr_2rny 1 2 . SER . rr_2rny 1 3 . HIS . rr_2rny 1 4 . MET . rr_2rny 1 5 . ARG . rr_2rny 1 6 . LYS . rr_2rny 1 7 . LYS . rr_2rny 1 8 . ILE . rr_2rny 1 9 . PHE . rr_2rny 1 10 . LYS . rr_2rny 1 11 . PRO . rr_2rny 1 12 . GLU . rr_2rny 1 13 . GLU . rr_2rny 1 14 . LEU . rr_2rny 1 15 . ARG . rr_2rny 1 16 . GLN . rr_2rny 1 17 . ALA . rr_2rny 1 18 . LEU . rr_2rny 1 19 . MET . rr_2rny 1 20 . PRO . rr_2rny 1 21 . THR . rr_2rny 1 22 . LEU . rr_2rny 1 23 . GLU . rr_2rny 1 24 . ALA . rr_2rny 1 25 . LEU . rr_2rny 1 26 . TYR . rr_2rny 1 27 . ARG . rr_2rny 1 28 . GLN . rr_2rny 1 29 . ASP . rr_2rny 1 30 . PRO . rr_2rny 1 31 . GLU . rr_2rny 1 32 . SER . rr_2rny 1 33 . LEU . rr_2rny 1 34 . PRO . rr_2rny 1 35 . PHE . rr_2rny 1 36 . ARG . rr_2rny 1 37 . GLN . rr_2rny 1 38 . PRO . rr_2rny 1 39 . VAL . rr_2rny 1 40 . ASP . rr_2rny 1 41 . PRO . rr_2rny 1 42 . GLN . rr_2rny 1 43 . LEU . rr_2rny 1 44 . LEU . rr_2rny 1 45 . GLY . rr_2rny 1 46 . ILE . rr_2rny 1 47 . PRO . rr_2rny 1 48 . ASP . rr_2rny 1 49 . TYR . rr_2rny 1 50 . PHE . rr_2rny 1 51 . ASP . rr_2rny 1 52 . ILE . rr_2rny 1 53 . VAL . rr_2rny 1 54 . LYS . rr_2rny 1 55 . ASN . rr_2rny 1 56 . PRO . rr_2rny 1 57 . MET . rr_2rny 1 58 . ASP . rr_2rny 1 59 . LEU . rr_2rny 1 60 . SER . rr_2rny 1 61 . THR . rr_2rny 1 62 . ILE . rr_2rny 1 63 . LYS . rr_2rny 1 64 . ARG . rr_2rny 1 65 . LYS . rr_2rny 1 66 . LEU . rr_2rny 1 67 . ASP . rr_2rny 1 68 . THR . rr_2rny 1 69 . GLY . rr_2rny 1 70 . GLN . rr_2rny 1 71 . TYR . rr_2rny 1 72 . GLN . rr_2rny 1 73 . GLU . rr_2rny 1 74 . PRO . rr_2rny 1 75 . TRP . rr_2rny 1 76 . GLN . rr_2rny 1 77 . TYR . rr_2rny 1 78 . VAL . rr_2rny 1 79 . ASP . rr_2rny 1 80 . ASP . rr_2rny 1 81 . VAL . rr_2rny 1 82 . TRP . rr_2rny 1 83 . LEU . rr_2rny 1 84 . MET . rr_2rny 1 85 . PHE . rr_2rny 1 86 . ASN . rr_2rny 1 87 . ASN . rr_2rny 1 88 . ALA . rr_2rny 1 89 . TRP . rr_2rny 1 90 . LEU . rr_2rny 1 91 . TYR . rr_2rny 1 92 . ASN . rr_2rny 1 93 . ARG . rr_2rny 1 94 . LYS . rr_2rny 1 95 . THR . rr_2rny 1 96 . SER . rr_2rny 1 97 . ARG . rr_2rny 1 98 . VAL . rr_2rny 1 99 . TYR . rr_2rny 1 100 . LYS . rr_2rny 1 101 . PHE . rr_2rny 1 102 . CYS . rr_2rny 1 103 . SER . rr_2rny 1 104 . LYS . rr_2rny 1 105 . LEU . rr_2rny 1 106 . ALA . rr_2rny 1 107 . GLU . rr_2rny 1 108 . VAL . rr_2rny 1 109 . PHE . rr_2rny 1 110 . GLU . rr_2rny 1 111 . GLN . rr_2rny 1 112 . GLU . rr_2rny 1 113 . ILE . rr_2rny 1 114 . ASP . rr_2rny 1 115 . PRO . rr_2rny 1 116 . VAL . rr_2rny 1 117 . MET . rr_2rny 1 118 . GLN . rr_2rny 1 119 . SER . rr_2rny 1 120 . LEU . rr_2rny 1 121 . GLY . rr_2rny 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . GLY 1 1 rr_2rny 1 . SER 2 2 rr_2rny 1 . HIS 3 3 rr_2rny 1 . MET 4 4 rr_2rny 1 . ARG 5 5 rr_2rny 1 . LYS 6 6 rr_2rny 1 . LYS 7 7 rr_2rny 1 . ILE 8 8 rr_2rny 1 . PHE 9 9 rr_2rny 1 . LYS 10 10 rr_2rny 1 . PRO 11 11 rr_2rny 1 . GLU 12 12 rr_2rny 1 . GLU 13 13 rr_2rny 1 . LEU 14 14 rr_2rny 1 . ARG 15 15 rr_2rny 1 . GLN 16 16 rr_2rny 1 . ALA 17 17 rr_2rny 1 . LEU 18 18 rr_2rny 1 . MET 19 19 rr_2rny 1 . PRO 20 20 rr_2rny 1 . THR 21 21 rr_2rny 1 . LEU 22 22 rr_2rny 1 . GLU 23 23 rr_2rny 1 . ALA 24 24 rr_2rny 1 . LEU 25 25 rr_2rny 1 . TYR 26 26 rr_2rny 1 . ARG 27 27 rr_2rny 1 . GLN 28 28 rr_2rny 1 . ASP 29 29 rr_2rny 1 . PRO 30 30 rr_2rny 1 . GLU 31 31 rr_2rny 1 . SER 32 32 rr_2rny 1 . LEU 33 33 rr_2rny 1 . PRO 34 34 rr_2rny 1 . PHE 35 35 rr_2rny 1 . ARG 36 36 rr_2rny 1 . GLN 37 37 rr_2rny 1 . PRO 38 38 rr_2rny 1 . VAL 39 39 rr_2rny 1 . ASP 40 40 rr_2rny 1 . PRO 41 41 rr_2rny 1 . GLN 42 42 rr_2rny 1 . LEU 43 43 rr_2rny 1 . LEU 44 44 rr_2rny 1 . GLY 45 45 rr_2rny 1 . ILE 46 46 rr_2rny 1 . PRO 47 47 rr_2rny 1 . ASP 48 48 rr_2rny 1 . TYR 49 49 rr_2rny 1 . PHE 50 50 rr_2rny 1 . ASP 51 51 rr_2rny 1 . ILE 52 52 rr_2rny 1 . VAL 53 53 rr_2rny 1 . LYS 54 54 rr_2rny 1 . ASN 55 55 rr_2rny 1 . PRO 56 56 rr_2rny 1 . MET 57 57 rr_2rny 1 . ASP 58 58 rr_2rny 1 . LEU 59 59 rr_2rny 1 . SER 60 60 rr_2rny 1 . THR 61 61 rr_2rny 1 . ILE 62 62 rr_2rny 1 . LYS 63 63 rr_2rny 1 . ARG 64 64 rr_2rny 1 . LYS 65 65 rr_2rny 1 . LEU 66 66 rr_2rny 1 . ASP 67 67 rr_2rny 1 . THR 68 68 rr_2rny 1 . GLY 69 69 rr_2rny 1 . GLN 70 70 rr_2rny 1 . TYR 71 71 rr_2rny 1 . GLN 72 72 rr_2rny 1 . GLU 73 73 rr_2rny 1 . PRO 74 74 rr_2rny 1 . TRP 75 75 rr_2rny 1 . GLN 76 76 rr_2rny 1 . TYR 77 77 rr_2rny 1 . VAL 78 78 rr_2rny 1 . ASP 79 79 rr_2rny 1 . ASP 80 80 rr_2rny 1 . VAL 81 81 rr_2rny 1 . TRP 82 82 rr_2rny 1 . LEU 83 83 rr_2rny 1 . MET 84 84 rr_2rny 1 . PHE 85 85 rr_2rny 1 . ASN 86 86 rr_2rny 1 . ASN 87 87 rr_2rny 1 . ALA 88 88 rr_2rny 1 . TRP 89 89 rr_2rny 1 . LEU 90 90 rr_2rny 1 . TYR 91 91 rr_2rny 1 . ASN 92 92 rr_2rny 1 . ARG 93 93 rr_2rny 1 . LYS 94 94 rr_2rny 1 . THR 95 95 rr_2rny 1 . SER 96 96 rr_2rny 1 . ARG 97 97 rr_2rny 1 . VAL 98 98 rr_2rny 1 . TYR 99 99 rr_2rny 1 . LYS 100 100 rr_2rny 1 . PHE 101 101 rr_2rny 1 . CYS 102 102 rr_2rny 1 . SER 103 103 rr_2rny 1 . LYS 104 104 rr_2rny 1 . LEU 105 105 rr_2rny 1 . ALA 106 106 rr_2rny 1 . GLU 107 107 rr_2rny 1 . VAL 108 108 rr_2rny 1 . PHE 109 109 rr_2rny 1 . GLU 110 110 rr_2rny 1 . GLN 111 111 rr_2rny 1 . GLU 112 112 rr_2rny 1 . ILE 113 113 rr_2rny 1 . ASP 114 114 rr_2rny 1 . PRO 115 115 rr_2rny 1 . VAL 116 116 rr_2rny 1 . MET 117 117 rr_2rny 1 . GLN 118 118 rr_2rny 1 . SER 119 119 rr_2rny 1 . LEU 120 120 rr_2rny 1 . GLY 121 121 rr_2rny 1 stop_ save_ save_Histone_H4 _Entity.Sf_category entity _Entity.Sf_framecode Histone_H4 _Entity.Entry_ID rr_2rny _Entity.ID 2 _Entity.Name Histone_H4 _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID B _Entity.Polymer_seq_one_letter_code GGAKRHRVLRDNIQ _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 14 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 2 _Entity.Formula_weight 1623.877 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . GLY . rr_2rny 2 2 . GLY . rr_2rny 2 3 . ALA . rr_2rny 2 4 . LYS . rr_2rny 2 5 . ARG . rr_2rny 2 6 . HIS . rr_2rny 2 7 . ARG . rr_2rny 2 8 . VAL . rr_2rny 2 9 . LEU . rr_2rny 2 10 . ARG . rr_2rny 2 11 . ASP . rr_2rny 2 12 . ASN . rr_2rny 2 13 . ILE . rr_2rny 2 14 . GLN . rr_2rny 2 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . GLY 1 1 rr_2rny 2 . GLY 2 2 rr_2rny 2 . ALA 3 3 rr_2rny 2 . LYS 4 4 rr_2rny 2 . ARG 5 5 rr_2rny 2 . HIS 6 6 rr_2rny 2 . ARG 7 7 rr_2rny 2 . VAL 8 8 rr_2rny 2 . LEU 9 9 rr_2rny 2 . ARG 10 10 rr_2rny 2 . ASP 11 11 rr_2rny 2 . ASN 12 12 rr_2rny 2 . ILE 13 13 rr_2rny 2 . GLN 14 14 rr_2rny 2 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2rny _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2rny _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2rny.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_2rny 1 1 2rny.mr . . NMRView 2 peak "Not applicable" "Not applicable" 0 rr_2rny 1 1 2rny.mr . . NMRView 3 peak "Not applicable" "Not applicable" 0 rr_2rny 1 1 2rny.mr . . NMRView 4 peak "Not applicable" "Not applicable" 0 rr_2rny 1 1 2rny.mr . . NMRView 5 peak "Not applicable" "Not applicable" 0 rr_2rny 1 1 2rny.mr . . NMRView 6 peak "Not applicable" "Not applicable" 0 rr_2rny 1 1 2rny.mr . . "MR format" 7 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_2rny 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2rny _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER TRANSFERASE/NUCLEAR PROTEIN 03-FEB-08 2RNY *TITLE COMPLEX STRUCTURES OF CBP BROMODOMAIN WITH H4 ACK20 PEPTIDE *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: CREB-BINDING PROTEIN; *COMPND 3 CHAIN: A; *COMPND 4 FRAGMENT: UNP RESIDUES 1081-1197; *COMPND 5 EC: 2.3.1.48; *COMPND 6 ENGINEERED: YES; *COMPND 7 MOL_ID: 2; *COMPND 8 MOLECULE: HISTONE H4; *COMPND 9 CHAIN: B; *COMPND 10 FRAGMENT: UNP RESIDUES 14-28; *COMPND 11 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 3 ORGANISM_COMMON: HUMAN; *SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 5 EXPRESSION_SYSTEM_VARIANT: BL21; *SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; *SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET15B; *SOURCE 8 MOL_ID: 2; *SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 10 ORGANISM_COMMON: HUMAN; *SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 12 EXPRESSION_SYSTEM_VARIANT: BL21; *SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; *SOURCE 14 EXPRESSION_SYSTEM_VECTOR: PET15B *KEYWDS BROMODOMAIN, HISTONE, CREB, CBP, P53, ACETYLATION, *KEYWDS 2 ACTIVATOR, CHROMOSOMAL REARRANGEMENT, DISEASE MUTATION, *KEYWDS 3 HOST-VIRUS INTERACTION, METAL-BINDING, METHYLATION, NUCLEUS, *KEYWDS 4 PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION, *KEYWDS 5 TRANSFERASE, ZINC, ZINC-FINGER, CHROMOSOMAL PROTEIN, DNA- *KEYWDS 6 BINDING, NUCLEOSOME CORE, TRANSFERASE/NUCLEAR PROTEIN *KEYWDS 7 COMPLEX *EXPDTA NMR, 20 STRUCTURES *AUTHOR L.ZENG, Q.ZHANG, G.GERONA-NAVARRO, M.M.ZHOU *REVDAT 1 06-MAY-08 2RNY 0 ; save_