data_wwPDB_remediated_restraints_file_for_PDB_entry_2jw6 # This wwPDB archive file contains, for PDB entry 2jw6: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2jw6 _Entry.Title "wwPDB remediated NMR restraints for PDB entry 2jw6" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 2jw6" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2jw6 _Assembly.ID 1 _Assembly.Name 2jw6 _Assembly.Number_of_components 3 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 2 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 5993.2462 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "Deformed epidermal autoregulatory factor 1 homolog" 1 $Deformed_epidermal_autoregulatory_factor_1_homolog A . no . . . . . . rr_2jw6 1 2 "ZINC ION" 2 $ZINC_ION B . no . . . . . . rr_2jw6 1 3 "ZINC ION" 2 $ZINC_ION C . no . . . . . . rr_2jw6 1 stop_ save_ save_Deformed_epidermal_autoregulatory_factor_1_homolog _Entity.Sf_category entity _Entity.Sf_framecode Deformed_epidermal_autoregulatory_factor_1_homolog _Entity.Entry_ID rr_2jw6 _Entity.ID 1 _Entity.Name Deformed_epidermal_autoregulatory_factor_1_homolog _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; GAMDAERKEQSCVNCGREAM SECTGCHKVNYCSTFCQRKD WKDHQHICGQSA ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 52 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 5862.4862 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . GLY . rr_2jw6 1 2 . ALA . rr_2jw6 1 3 . MET . rr_2jw6 1 4 . ASP . rr_2jw6 1 5 . ALA . rr_2jw6 1 6 . GLU . rr_2jw6 1 7 . ARG . rr_2jw6 1 8 . LYS . rr_2jw6 1 9 . GLU . rr_2jw6 1 10 . GLN . rr_2jw6 1 11 . SER . rr_2jw6 1 12 . CYS . rr_2jw6 1 13 . VAL . rr_2jw6 1 14 . ASN . rr_2jw6 1 15 . CYS . rr_2jw6 1 16 . GLY . rr_2jw6 1 17 . ARG . rr_2jw6 1 18 . GLU . rr_2jw6 1 19 . ALA . rr_2jw6 1 20 . MET . rr_2jw6 1 21 . SER . rr_2jw6 1 22 . GLU . rr_2jw6 1 23 . CYS . rr_2jw6 1 24 . THR . rr_2jw6 1 25 . GLY . rr_2jw6 1 26 . CYS . rr_2jw6 1 27 . HIS . rr_2jw6 1 28 . LYS . rr_2jw6 1 29 . VAL . rr_2jw6 1 30 . ASN . rr_2jw6 1 31 . TYR . rr_2jw6 1 32 . CYS . rr_2jw6 1 33 . SER . rr_2jw6 1 34 . THR . rr_2jw6 1 35 . PHE . rr_2jw6 1 36 . CYS . rr_2jw6 1 37 . GLN . rr_2jw6 1 38 . ARG . rr_2jw6 1 39 . LYS . rr_2jw6 1 40 . ASP . rr_2jw6 1 41 . TRP . rr_2jw6 1 42 . LYS . rr_2jw6 1 43 . ASP . rr_2jw6 1 44 . HIS . rr_2jw6 1 45 . GLN . rr_2jw6 1 46 . HIS . rr_2jw6 1 47 . ILE . rr_2jw6 1 48 . CYS . rr_2jw6 1 49 . GLY . rr_2jw6 1 50 . GLN . rr_2jw6 1 51 . SER . rr_2jw6 1 52 . ALA . rr_2jw6 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . GLY 1 1 rr_2jw6 1 . ALA 2 2 rr_2jw6 1 . MET 3 3 rr_2jw6 1 . ASP 4 4 rr_2jw6 1 . ALA 5 5 rr_2jw6 1 . GLU 6 6 rr_2jw6 1 . ARG 7 7 rr_2jw6 1 . LYS 8 8 rr_2jw6 1 . GLU 9 9 rr_2jw6 1 . GLN 10 10 rr_2jw6 1 . SER 11 11 rr_2jw6 1 . CYS 12 12 rr_2jw6 1 . VAL 13 13 rr_2jw6 1 . ASN 14 14 rr_2jw6 1 . CYS 15 15 rr_2jw6 1 . GLY 16 16 rr_2jw6 1 . ARG 17 17 rr_2jw6 1 . GLU 18 18 rr_2jw6 1 . ALA 19 19 rr_2jw6 1 . MET 20 20 rr_2jw6 1 . SER 21 21 rr_2jw6 1 . GLU 22 22 rr_2jw6 1 . CYS 23 23 rr_2jw6 1 . THR 24 24 rr_2jw6 1 . GLY 25 25 rr_2jw6 1 . CYS 26 26 rr_2jw6 1 . HIS 27 27 rr_2jw6 1 . LYS 28 28 rr_2jw6 1 . VAL 29 29 rr_2jw6 1 . ASN 30 30 rr_2jw6 1 . TYR 31 31 rr_2jw6 1 . CYS 32 32 rr_2jw6 1 . SER 33 33 rr_2jw6 1 . THR 34 34 rr_2jw6 1 . PHE 35 35 rr_2jw6 1 . CYS 36 36 rr_2jw6 1 . GLN 37 37 rr_2jw6 1 . ARG 38 38 rr_2jw6 1 . LYS 39 39 rr_2jw6 1 . ASP 40 40 rr_2jw6 1 . TRP 41 41 rr_2jw6 1 . LYS 42 42 rr_2jw6 1 . ASP 43 43 rr_2jw6 1 . HIS 44 44 rr_2jw6 1 . GLN 45 45 rr_2jw6 1 . HIS 46 46 rr_2jw6 1 . ILE 47 47 rr_2jw6 1 . CYS 48 48 rr_2jw6 1 . GLY 49 49 rr_2jw6 1 . GLN 50 50 rr_2jw6 1 . SER 51 51 rr_2jw6 1 . ALA 52 52 rr_2jw6 1 stop_ save_ save_ZINC_ION _Entity.Sf_category entity _Entity.Sf_framecode ZINC_ION _Entity.Entry_ID rr_2jw6 _Entity.ID 2 _Entity.Name ZINC_ION _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_chirality yes _Entity.Nstd_linkage no _Entity.Nonpolymer_comp_ID ZN _Entity.Nonpolymer_comp_label $chem_comp_ZN _Entity.Number_of_monomers 1 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 2 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . ZN . rr_2jw6 2 stop_ save_ save_chem_comp_ZN _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_ZN _Chem_comp.Entry_ID rr_2jw6 _Chem_comp.ID ZN _Chem_comp.Name "ZINC ION" _Chem_comp.Type non-polymer _Chem_comp.PDB_code ZN _Chem_comp.Formal_charge 2 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula Zn _Chem_comp.Formula_weight 65.38 save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2jw6 _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 10 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2jw6 _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2jw6.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_2jw6 1 1 2jw6.mr . . STAR 2 comment "Not applicable" "Not applicable" 0 rr_2jw6 1 1 2jw6.mr . . STAR 3 distance NOE simple 0 rr_2jw6 1 1 2jw6.mr . . STAR 4 unknown "Not applicable" "Not applicable" 0 rr_2jw6 1 1 2jw6.mr . . STAR 5 comment "Not applicable" "Not applicable" 0 rr_2jw6 1 1 2jw6.mr . . "MR format" 6 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_2jw6 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2jw6 _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER TRANSCRIPTION 08-OCT-07 2JW6 *TITLE SOLUTION STRUCTURE OF THE DEAF1 MYND DOMAIN *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: DEFORMED EPIDERMAL AUTOREGULATORY FACTOR 1 *COMPND 3 HOMOLOG; *COMPND 4 CHAIN: A; *COMPND 5 FRAGMENT: MYND DOMAIN; *COMPND 6 SYNONYM: NUCLEAR DEAF-1- RELATED TRANSCRIPTIONAL REGULATOR, *COMPND 7 NUDR, SUPPRESSIN, ZINC FINGER MYND DOMAIN-CONTAINING *COMPND 8 PROTEIN 5; *COMPND 9 ENGINEERED: YES *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 3 ORGANISM_COMMON: HUMAN; *SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; *SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET24D *KEYWDS ZINC BINDING DOMAIN, TRANSCRIPTION, ALTERNATIVE SPLICING, *KEYWDS 2 DISEASE MUTATION, DNA-BINDING, METAL-BINDING, NUCLEUS, *KEYWDS 3 PHOSPHORYLATION, SECRETED, TRANSCRIPTION REGULATION, ZINC- *KEYWDS 4 FINGER *EXPDTA NMR, 10 STRUCTURES *AUTHOR R.SPADACCINI, H.PERRIN, M.BOTTOMLEY, S.ANSIEU, M.SATTLER *REVDAT 1 25-DEC-07 2JW6 0 ; save_ save_MR_file_comment_5 _Org_constr_file_comment.Sf_framecode MR_file_comment_5 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2jw6 _Org_constr_file_comment.ID 3 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 5 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; ####################################### # Cited references within the entry # ####################################### save_reference_1 _Saveframe_category citation _Citation_class citation _Citation_full ; M. Nilges and S.I. O'Donoghue. Ambiguous NOEs and automated NOE assignment. Prog.NMR spectr. 32:107-139, 1998. ; save_ save_reference_2 _Saveframe_category citation _Citation_class citation _Citation_full ; Linge,J.P., O'Donoghue,S.I. and Nilges,M. in Methods Enzymol., Nuclear Magnetic Resonance of Biological Macromolecules Part B.:71-90, Academic Press, 2001. ; save_ ; save_ save_MR_file_comment_2 _Org_constr_file_comment.Sf_framecode MR_file_comment_2 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2jw6 _Org_constr_file_comment.ID 2 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 2 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; data_distance_constraints ####################### # Entry information # ####################### save_entry_information _Saveframe_category entry_information _NMR_STAR_version "Aria 1.1 development" save_ ############################ # Computer software used # ############################ save_Aria _Saveframe_category software _Name Aria _Version 1.1 _Details "ARIA 1.1 is using CNS 1.1" loop_ _Vendor _Address _Electronic_address "Dr. Michael Nilges, Institut Pasteur" ; Unite de Bioinformatique Structurale, Institut Pasteur, 25-28 rue du Dr Roux, 75015 Paris, France ; nilges@pasteur.fr stop_ loop_ _Task "Automated NOE assignment" "NMR structure calculation" stop_ loop_ _Citation_label $reference_1 $reference_2 stop_ save_ ; save_