data_wwPDB_remediated_restraints_file_for_PDB_entry_2bug # This wwPDB archive file contains, for PDB entry 2bug: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, W Vranken, C Penkett, J Lin, CF Schulte, G Vuister, G Vriend, # JL Markley, EL Ulrich. BioMagResBank database `NMR Restraints Grid` with # curated sets of experimental NMR restraints for over 4,000 protein and nucleic # acid PDB entries. (in preparation) save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_2bug _Entry.Title "wwPDB remediated NMR restraints for PDB entry 2bug" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 2bug" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_2bug _Assembly.ID 1 _Assembly.Name 2bug _Assembly.Number_of_components 2 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 16854.0609 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 "SERINE THREONINE PROTEIN PHOSPHATASE 5" 1 $SERINE_THREONINE_PROTEIN_PHOSPHATASE_5 A . no . . . . . . rr_2bug 1 2 HSP90 2 $HSP90 B . no . . . . . . rr_2bug 1 stop_ save_ save_SERINE_THREONINE_PROTEIN_PHOSPHATASE_5 _Entity.Sf_category entity _Entity.Sf_framecode SERINE_THREONINE_PROTEIN_PHOSPHATASE_5 _Entity.Entry_ID rr_2bug _Entity.ID 1 _Entity.Name SERINE_THREONINE_PROTEIN_PHOSPHATASE_5 _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; MSGHHHHHHTDPPADGALKR AEELKTQANDYFKAKDYENA IKFYSQAIELNPSNAIYYGN RSLAYLRTECYGYALNDATR AIELDKKYIKGYYRRAASNM ALGKFRAALRDYETVVKVKP HDKDAKMKYQECNKIVKQKA ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 140 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 16194.3969 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . MET . rr_2bug 1 2 . SER . rr_2bug 1 3 . GLY . rr_2bug 1 4 . HIS . rr_2bug 1 5 . HIS . rr_2bug 1 6 . HIS . rr_2bug 1 7 . HIS . rr_2bug 1 8 . HIS . rr_2bug 1 9 . HIS . rr_2bug 1 10 . THR . rr_2bug 1 11 . ASP . rr_2bug 1 12 . PRO . rr_2bug 1 13 . PRO . rr_2bug 1 14 . ALA . rr_2bug 1 15 . ASP . rr_2bug 1 16 . GLY . rr_2bug 1 17 . ALA . rr_2bug 1 18 . LEU . rr_2bug 1 19 . LYS . rr_2bug 1 20 . ARG . rr_2bug 1 21 . ALA . rr_2bug 1 22 . GLU . rr_2bug 1 23 . GLU . rr_2bug 1 24 . LEU . rr_2bug 1 25 . LYS . rr_2bug 1 26 . THR . rr_2bug 1 27 . GLN . rr_2bug 1 28 . ALA . rr_2bug 1 29 . ASN . rr_2bug 1 30 . ASP . rr_2bug 1 31 . TYR . rr_2bug 1 32 . PHE . rr_2bug 1 33 . LYS . rr_2bug 1 34 . ALA . rr_2bug 1 35 . LYS . rr_2bug 1 36 . ASP . rr_2bug 1 37 . TYR . rr_2bug 1 38 . GLU . rr_2bug 1 39 . ASN . rr_2bug 1 40 . ALA . rr_2bug 1 41 . ILE . rr_2bug 1 42 . LYS . rr_2bug 1 43 . PHE . rr_2bug 1 44 . TYR . rr_2bug 1 45 . SER . rr_2bug 1 46 . GLN . rr_2bug 1 47 . ALA . rr_2bug 1 48 . ILE . rr_2bug 1 49 . GLU . rr_2bug 1 50 . LEU . rr_2bug 1 51 . ASN . rr_2bug 1 52 . PRO . rr_2bug 1 53 . SER . rr_2bug 1 54 . ASN . rr_2bug 1 55 . ALA . rr_2bug 1 56 . ILE . rr_2bug 1 57 . TYR . rr_2bug 1 58 . TYR . rr_2bug 1 59 . GLY . rr_2bug 1 60 . ASN . rr_2bug 1 61 . ARG . rr_2bug 1 62 . SER . rr_2bug 1 63 . LEU . rr_2bug 1 64 . ALA . rr_2bug 1 65 . TYR . rr_2bug 1 66 . LEU . rr_2bug 1 67 . ARG . rr_2bug 1 68 . THR . rr_2bug 1 69 . GLU . rr_2bug 1 70 . CYS . rr_2bug 1 71 . TYR . rr_2bug 1 72 . GLY . rr_2bug 1 73 . TYR . rr_2bug 1 74 . ALA . rr_2bug 1 75 . LEU . rr_2bug 1 76 . ASN . rr_2bug 1 77 . ASP . rr_2bug 1 78 . ALA . rr_2bug 1 79 . THR . rr_2bug 1 80 . ARG . rr_2bug 1 81 . ALA . rr_2bug 1 82 . ILE . rr_2bug 1 83 . GLU . rr_2bug 1 84 . LEU . rr_2bug 1 85 . ASP . rr_2bug 1 86 . LYS . rr_2bug 1 87 . LYS . rr_2bug 1 88 . TYR . rr_2bug 1 89 . ILE . rr_2bug 1 90 . LYS . rr_2bug 1 91 . GLY . rr_2bug 1 92 . TYR . rr_2bug 1 93 . TYR . rr_2bug 1 94 . ARG . rr_2bug 1 95 . ARG . rr_2bug 1 96 . ALA . rr_2bug 1 97 . ALA . rr_2bug 1 98 . SER . rr_2bug 1 99 . ASN . rr_2bug 1 100 . MET . rr_2bug 1 101 . ALA . rr_2bug 1 102 . LEU . rr_2bug 1 103 . GLY . rr_2bug 1 104 . LYS . rr_2bug 1 105 . PHE . rr_2bug 1 106 . ARG . rr_2bug 1 107 . ALA . rr_2bug 1 108 . ALA . rr_2bug 1 109 . LEU . rr_2bug 1 110 . ARG . rr_2bug 1 111 . ASP . rr_2bug 1 112 . TYR . rr_2bug 1 113 . GLU . rr_2bug 1 114 . THR . rr_2bug 1 115 . VAL . rr_2bug 1 116 . VAL . rr_2bug 1 117 . LYS . rr_2bug 1 118 . VAL . rr_2bug 1 119 . LYS . rr_2bug 1 120 . PRO . rr_2bug 1 121 . HIS . rr_2bug 1 122 . ASP . rr_2bug 1 123 . LYS . rr_2bug 1 124 . ASP . rr_2bug 1 125 . ALA . rr_2bug 1 126 . LYS . rr_2bug 1 127 . MET . rr_2bug 1 128 . LYS . rr_2bug 1 129 . TYR . rr_2bug 1 130 . GLN . rr_2bug 1 131 . GLU . rr_2bug 1 132 . CYS . rr_2bug 1 133 . ASN . rr_2bug 1 134 . LYS . rr_2bug 1 135 . ILE . rr_2bug 1 136 . VAL . rr_2bug 1 137 . LYS . rr_2bug 1 138 . GLN . rr_2bug 1 139 . LYS . rr_2bug 1 140 . ALA . rr_2bug 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . MET 1 1 rr_2bug 1 . SER 2 2 rr_2bug 1 . GLY 3 3 rr_2bug 1 . HIS 4 4 rr_2bug 1 . HIS 5 5 rr_2bug 1 . HIS 6 6 rr_2bug 1 . HIS 7 7 rr_2bug 1 . HIS 8 8 rr_2bug 1 . HIS 9 9 rr_2bug 1 . THR 10 10 rr_2bug 1 . ASP 11 11 rr_2bug 1 . PRO 12 12 rr_2bug 1 . PRO 13 13 rr_2bug 1 . ALA 14 14 rr_2bug 1 . ASP 15 15 rr_2bug 1 . GLY 16 16 rr_2bug 1 . ALA 17 17 rr_2bug 1 . LEU 18 18 rr_2bug 1 . LYS 19 19 rr_2bug 1 . ARG 20 20 rr_2bug 1 . ALA 21 21 rr_2bug 1 . GLU 22 22 rr_2bug 1 . GLU 23 23 rr_2bug 1 . LEU 24 24 rr_2bug 1 . LYS 25 25 rr_2bug 1 . THR 26 26 rr_2bug 1 . GLN 27 27 rr_2bug 1 . ALA 28 28 rr_2bug 1 . ASN 29 29 rr_2bug 1 . ASP 30 30 rr_2bug 1 . TYR 31 31 rr_2bug 1 . PHE 32 32 rr_2bug 1 . LYS 33 33 rr_2bug 1 . ALA 34 34 rr_2bug 1 . LYS 35 35 rr_2bug 1 . ASP 36 36 rr_2bug 1 . TYR 37 37 rr_2bug 1 . GLU 38 38 rr_2bug 1 . ASN 39 39 rr_2bug 1 . ALA 40 40 rr_2bug 1 . ILE 41 41 rr_2bug 1 . LYS 42 42 rr_2bug 1 . PHE 43 43 rr_2bug 1 . TYR 44 44 rr_2bug 1 . SER 45 45 rr_2bug 1 . GLN 46 46 rr_2bug 1 . ALA 47 47 rr_2bug 1 . ILE 48 48 rr_2bug 1 . GLU 49 49 rr_2bug 1 . LEU 50 50 rr_2bug 1 . ASN 51 51 rr_2bug 1 . PRO 52 52 rr_2bug 1 . SER 53 53 rr_2bug 1 . ASN 54 54 rr_2bug 1 . ALA 55 55 rr_2bug 1 . ILE 56 56 rr_2bug 1 . TYR 57 57 rr_2bug 1 . TYR 58 58 rr_2bug 1 . GLY 59 59 rr_2bug 1 . ASN 60 60 rr_2bug 1 . ARG 61 61 rr_2bug 1 . SER 62 62 rr_2bug 1 . LEU 63 63 rr_2bug 1 . ALA 64 64 rr_2bug 1 . TYR 65 65 rr_2bug 1 . LEU 66 66 rr_2bug 1 . ARG 67 67 rr_2bug 1 . THR 68 68 rr_2bug 1 . GLU 69 69 rr_2bug 1 . CYS 70 70 rr_2bug 1 . TYR 71 71 rr_2bug 1 . GLY 72 72 rr_2bug 1 . TYR 73 73 rr_2bug 1 . ALA 74 74 rr_2bug 1 . LEU 75 75 rr_2bug 1 . ASN 76 76 rr_2bug 1 . ASP 77 77 rr_2bug 1 . ALA 78 78 rr_2bug 1 . THR 79 79 rr_2bug 1 . ARG 80 80 rr_2bug 1 . ALA 81 81 rr_2bug 1 . ILE 82 82 rr_2bug 1 . GLU 83 83 rr_2bug 1 . LEU 84 84 rr_2bug 1 . ASP 85 85 rr_2bug 1 . LYS 86 86 rr_2bug 1 . LYS 87 87 rr_2bug 1 . TYR 88 88 rr_2bug 1 . ILE 89 89 rr_2bug 1 . LYS 90 90 rr_2bug 1 . GLY 91 91 rr_2bug 1 . TYR 92 92 rr_2bug 1 . TYR 93 93 rr_2bug 1 . ARG 94 94 rr_2bug 1 . ARG 95 95 rr_2bug 1 . ALA 96 96 rr_2bug 1 . ALA 97 97 rr_2bug 1 . SER 98 98 rr_2bug 1 . ASN 99 99 rr_2bug 1 . MET 100 100 rr_2bug 1 . ALA 101 101 rr_2bug 1 . LEU 102 102 rr_2bug 1 . GLY 103 103 rr_2bug 1 . LYS 104 104 rr_2bug 1 . PHE 105 105 rr_2bug 1 . ARG 106 106 rr_2bug 1 . ALA 107 107 rr_2bug 1 . ALA 108 108 rr_2bug 1 . LEU 109 109 rr_2bug 1 . ARG 110 110 rr_2bug 1 . ASP 111 111 rr_2bug 1 . TYR 112 112 rr_2bug 1 . GLU 113 113 rr_2bug 1 . THR 114 114 rr_2bug 1 . VAL 115 115 rr_2bug 1 . VAL 116 116 rr_2bug 1 . LYS 117 117 rr_2bug 1 . VAL 118 118 rr_2bug 1 . LYS 119 119 rr_2bug 1 . PRO 120 120 rr_2bug 1 . HIS 121 121 rr_2bug 1 . ASP 122 122 rr_2bug 1 . LYS 123 123 rr_2bug 1 . ASP 124 124 rr_2bug 1 . ALA 125 125 rr_2bug 1 . LYS 126 126 rr_2bug 1 . MET 127 127 rr_2bug 1 . LYS 128 128 rr_2bug 1 . TYR 129 129 rr_2bug 1 . GLN 130 130 rr_2bug 1 . GLU 131 131 rr_2bug 1 . CYS 132 132 rr_2bug 1 . ASN 133 133 rr_2bug 1 . LYS 134 134 rr_2bug 1 . ILE 135 135 rr_2bug 1 . VAL 136 136 rr_2bug 1 . LYS 137 137 rr_2bug 1 . GLN 138 138 rr_2bug 1 . LYS 139 139 rr_2bug 1 . ALA 140 140 rr_2bug 1 stop_ save_ save_HSP90 _Entity.Sf_category entity _Entity.Sf_framecode HSP90 _Entity.Entry_ID rr_2bug _Entity.ID 2 _Entity.Name HSP90 _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_chirality yes _Entity.Nstd_linkage yes _Entity.Nonpolymer_comp_ID ACE _Entity.Nonpolymer_comp_label $chem_comp_ACE _Entity.Number_of_monomers 6 _Entity.Paramagnetic no _Entity.Thiol_state "not present" _Entity.Parent_entity_ID 2 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . ACE . rr_2bug 2 2 . MET . rr_2bug 2 3 . GLU . rr_2bug 2 4 . GLU . rr_2bug 2 5 . VAL . rr_2bug 2 6 . ASP . rr_2bug 2 stop_ save_ save_chem_comp_ACE _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_ACE _Chem_comp.Entry_ID rr_2bug _Chem_comp.ID ACE _Chem_comp.Name "ACETYL GROUP" _Chem_comp.Type non-polymer _Chem_comp.PDB_code ACE _Chem_comp.Formal_charge 0 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula "C2 H3 O" _Chem_comp.Formula_weight 43.0451 loop_ _Chem_comp_common_name.Name _Chem_comp_common_name.Type _Chem_comp_common_name.Entry_ID _Chem_comp_common_name.Comp_ID acetaldehyde name rr_2bug ACE stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_2bug _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 19 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_2bug _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 2bug.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_2bug 1 1 2bug.mr . . unknown 2 distance "general distance" simple 0 rr_2bug 1 1 2bug.mr . . "MR format" 3 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_2bug 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_2bug _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER HYDROLASE 13-MAY-05 2BUG *TITLE SOLUTION STRUCTURE OF THE TPR DOMAIN FROM PROTEIN *TITLE 2 PHOSPHATASE 5 IN COMPLEX WITH HSP90 DERIVED PEPTIDE *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: SERINE/THREONINE PROTEIN PHOSPHATASE 5; *COMPND 3 SYNONYM: PROTEIN PHOSPHATASE 5, PP5, PPT; *COMPND 4 CHAIN: A; *COMPND 5 FRAGMENT: TETRATRICOPEPTIDE DOMAIN, RESIDUES 19-147; *COMPND 6 EC: 3.1.3.16; *COMPND 7 MUTATION: YES; *COMPND 8 ENGINEERED: YES; *COMPND 9 OTHER_DETAILS: RESIDUES 19-147 WITH N-TERMINAL HIS-TAG; *COMPND 10 MOL_ID: 2; *COMPND 11 MOLECULE: HSP90; *COMPND 12 CHAIN: B; *COMPND 13 MOLECULE:DSCR1; *COMPND 14 FRAGMENT: C-TERMINAL PENTAPEPTIDE, RESIDUES 1-5; *COMPND 15 OTHER_DETAILS: N-TERMINALLY ACETYLATED *SOURCE MOL_ID: 1; *SOURCE 2 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 3 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); *SOURCE 4 EXPRESSION_SYSTEM_PLASMID: PQE31; *SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 6 ORGANISM_COMMON: HUMAN; *SOURCE 7 MOL_ID: 2; *SOURCE 8 SYNTHETIC: YES; *SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; *SOURCE 10 ORGANISM_COMMON: HUMAN *KEYWDS TETRATRICOPEPTIDE DOMAIN, PROTEIN PHOSPHATASE, HSP90 *KEYWDS 2 BINDING, HYDROLASE, IRON, MANGANESE, METAL-BINDING *EXPDTA NMR, 19 STRUCTURES *AUTHOR M.J.CLIFF,R.HARRIS,D.BARFORD,J.E.LADBURY,M.A.WILLIAMS *REVDAT 1 13-JUN-05 2BUG 0 ; save_