data_wwPDB_remediated_restraints_file_for_PDB_entry_1e8j # This wwPDB archive file contains, for PDB entry 1e8j: # # - Sequence information from the PDB mmCIF file # - NMR restraints from the PDB MR file # # In this file, the NMR restraints share the same atom names as in the coordinate # file, and in this way can differ from the data deposited at the wwPDB. To achieve # this aim, the NMR restraints were parsed from their original format files, and # the coordinates and NMR restraints information were subsequently harmonized. # # Due to the complexity of this harmonization process, minor modifications could # have occurred to the NMR restraints information, or data could have been lost # because of parsing or conversion errors. The PDB file remains the # authoritative reference for the atomic coordinates and the originally deposited # restraints files remain the primary reference for these data. # # This file is generated as part of the wwPDB at the BioMagResBank (BMRB) in # collaboration with the PDBe (formerly MSD) group at the European # Bioinformatics Institute (EBI) and the CMBI/IMM group at the Radboud # University of Nijmegen. # # Several software packages were used to produce this file: # # - Wattos (BMRB and CMBI/IMM). # - FormatConverter and NMRStarExport (PDBe). # - CCPN framework (http://www.ccpn.ac.uk/). # # More information about this process can be found in the references below. # Please cite the original reference for this PDB entry. # # JF Doreleijers, A Nederveen, W Vranken, J Lin, AM Bonvin, R Kaptein, JL # Markley, and EL Ulrich (2005). BioMagResBank databases DOCR and FRED # containing converted and filtered sets of experimental NMR restraints and # coordinates from over 500 protein PDB structures. J. Biomol. NMR 32, 1-12. # # WF Vranken, W Boucher, TJ Stevens, RH Fogh, A Pajon, M Llinas, EL Ulrich, JL # Markley, J Ionides, ED Laue (2005). The CCPN data model for NMR spectroscopy: # development of a software pipeline. Proteins 59, 687-696. # # JF Doreleijers, WF Vranken, C Schulte, J Lin, JR Wedell, CJ Penkett, GW Vuister, # G Vriend, JL Markley, and EL Ulrich (2009). The NMR Restraints Grid at BMRB for # 5,266 Protein and Nucleic Acid PDB Entries. J Biomol. NMR 45, 389–396. save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID rr_1e8j _Entry.Title "wwPDB remediated NMR restraints for PDB entry 1e8j" _Entry.NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details "Contains the remediated restraint lists and coordinates for PDB entry 1e8j" save_ save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID rr_1e8j _Assembly.ID 1 _Assembly.Name 1e8j _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state "all free" _Assembly.Molecular_mass 5662.1811 loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 RUBREDOXIN 1 $RUBREDOXIN A . no . . . . . . rr_1e8j 1 stop_ save_ save_RUBREDOXIN _Entity.Sf_category entity _Entity.Sf_framecode RUBREDOXIN _Entity.Entry_ID rr_1e8j _Entity.ID 1 _Entity.Name RUBREDOXIN _Entity.Type polymer _Entity.Polymer_type polypeptide(L) _Entity.Polymer_strand_ID A _Entity.Polymer_seq_one_letter_code ; MDIYVCTVCGYEYDPAKGDP DSGIKPGTKFEDLPDDWACP VCGASKDAFEKQ ; _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Number_of_monomers 52 _Entity.Paramagnetic no _Entity.Thiol_state "all free" _Entity.Parent_entity_ID 1 _Entity.Formula_weight 5662.1811 loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . MET . rr_1e8j 1 2 . ASP . rr_1e8j 1 3 . ILE . rr_1e8j 1 4 . TYR . rr_1e8j 1 5 . VAL . rr_1e8j 1 6 . CYS . rr_1e8j 1 7 . THR . rr_1e8j 1 8 . VAL . rr_1e8j 1 9 . CYS . rr_1e8j 1 10 . GLY . rr_1e8j 1 11 . TYR . rr_1e8j 1 12 . GLU . rr_1e8j 1 13 . TYR . rr_1e8j 1 14 . ASP . rr_1e8j 1 15 . PRO . rr_1e8j 1 16 . ALA . rr_1e8j 1 17 . LYS . rr_1e8j 1 18 . GLY . rr_1e8j 1 19 . ASP . rr_1e8j 1 20 . PRO . rr_1e8j 1 21 . ASP . rr_1e8j 1 22 . SER . rr_1e8j 1 23 . GLY . rr_1e8j 1 24 . ILE . rr_1e8j 1 25 . LYS . rr_1e8j 1 26 . PRO . rr_1e8j 1 27 . GLY . rr_1e8j 1 28 . THR . rr_1e8j 1 29 . LYS . rr_1e8j 1 30 . PHE . rr_1e8j 1 31 . GLU . rr_1e8j 1 32 . ASP . rr_1e8j 1 33 . LEU . rr_1e8j 1 34 . PRO . rr_1e8j 1 35 . ASP . rr_1e8j 1 36 . ASP . rr_1e8j 1 37 . TRP . rr_1e8j 1 38 . ALA . rr_1e8j 1 39 . CYS . rr_1e8j 1 40 . PRO . rr_1e8j 1 41 . VAL . rr_1e8j 1 42 . CYS . rr_1e8j 1 43 . GLY . rr_1e8j 1 44 . ALA . rr_1e8j 1 45 . SER . rr_1e8j 1 46 . LYS . rr_1e8j 1 47 . ASP . rr_1e8j 1 48 . ALA . rr_1e8j 1 49 . PHE . rr_1e8j 1 50 . GLU . rr_1e8j 1 51 . LYS . rr_1e8j 1 52 . GLN . rr_1e8j 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . MET 1 1 rr_1e8j 1 . ASP 2 2 rr_1e8j 1 . ILE 3 3 rr_1e8j 1 . TYR 4 4 rr_1e8j 1 . VAL 5 5 rr_1e8j 1 . CYS 6 6 rr_1e8j 1 . THR 7 7 rr_1e8j 1 . VAL 8 8 rr_1e8j 1 . CYS 9 9 rr_1e8j 1 . GLY 10 10 rr_1e8j 1 . TYR 11 11 rr_1e8j 1 . GLU 12 12 rr_1e8j 1 . TYR 13 13 rr_1e8j 1 . ASP 14 14 rr_1e8j 1 . PRO 15 15 rr_1e8j 1 . ALA 16 16 rr_1e8j 1 . LYS 17 17 rr_1e8j 1 . GLY 18 18 rr_1e8j 1 . ASP 19 19 rr_1e8j 1 . PRO 20 20 rr_1e8j 1 . ASP 21 21 rr_1e8j 1 . SER 22 22 rr_1e8j 1 . GLY 23 23 rr_1e8j 1 . ILE 24 24 rr_1e8j 1 . LYS 25 25 rr_1e8j 1 . PRO 26 26 rr_1e8j 1 . GLY 27 27 rr_1e8j 1 . THR 28 28 rr_1e8j 1 . LYS 29 29 rr_1e8j 1 . PHE 30 30 rr_1e8j 1 . GLU 31 31 rr_1e8j 1 . ASP 32 32 rr_1e8j 1 . LEU 33 33 rr_1e8j 1 . PRO 34 34 rr_1e8j 1 . ASP 35 35 rr_1e8j 1 . ASP 36 36 rr_1e8j 1 . TRP 37 37 rr_1e8j 1 . ALA 38 38 rr_1e8j 1 . CYS 39 39 rr_1e8j 1 . PRO 40 40 rr_1e8j 1 . VAL 41 41 rr_1e8j 1 . CYS 42 42 rr_1e8j 1 . GLY 43 43 rr_1e8j 1 . ALA 44 44 rr_1e8j 1 . SER 45 45 rr_1e8j 1 . LYS 46 46 rr_1e8j 1 . ASP 47 47 rr_1e8j 1 . ALA 48 48 rr_1e8j 1 . PHE 49 49 rr_1e8j 1 . GLU 50 50 rr_1e8j 1 . LYS 51 51 rr_1e8j 1 . GLN 52 52 rr_1e8j 1 stop_ save_ save_conformer_statistics _Conformer_stat_list.Sf_category conformer_statistics _Conformer_stat_list.Sf_framecode conformer_statistics _Conformer_stat_list.Entry_ID rr_1e8j _Conformer_stat_list.ID 1 _Conformer_stat_list.Conf_family_coord_set_ID 1 _Conformer_stat_list.Conf_family_coord_set_label $Original_constraints_and_structures _Conformer_stat_list.Conformer_submitted_total_num 20 save_ save_global_Org_file_characteristics _Constraint_stat_list.Sf_framecode global_Org_file_characteristics _Constraint_stat_list.Sf_category constraint_statistics _Constraint_stat_list.Entry_ID rr_1e8j _Constraint_stat_list.ID 1 loop_ _Constraint_file.ID _Constraint_file.Constraint_filename _Constraint_file.Software_ID _Constraint_file.Software_label _Constraint_file.Software_name _Constraint_file.Block_ID _Constraint_file.Constraint_type _Constraint_file.Constraint_subtype _Constraint_file.Constraint_subsubtype _Constraint_file.Constraint_number _Constraint_file.Entry_ID _Constraint_file.Constraint_stat_list_ID 1 1e8j.mr . . "MR format" 1 comment "Not applicable" "Not applicable" 0 rr_1e8j 1 1 1e8j.mr . . DYANA/DIANA 2 peak "Not applicable" "Not applicable" 0 rr_1e8j 1 1 1e8j.mr . . "MR format" 3 "nomenclature mapping" "Not applicable" "Not applicable" 0 rr_1e8j 1 stop_ save_ save_MR_file_comment_1 _Org_constr_file_comment.Sf_framecode MR_file_comment_1 _Org_constr_file_comment.Sf_category org_constr_file_comment _Org_constr_file_comment.Entry_ID rr_1e8j _Org_constr_file_comment.ID 1 _Org_constr_file_comment.Constraint_file_ID 1 _Org_constr_file_comment.Block_ID 1 _Org_constr_file_comment.Details "Generated by Wattos" _Org_constr_file_comment.Comment ; *HEADER IRON-SULFUR-PROTEIN 21-SEP-00 1E8J *TITLE SOLUTION STRUCTURE OF DESULFOVIBRIO GIGAS ZINC RUBREDOXIN, *TITLE 2 NMR, 20 STRUCTURES *COMPND MOL_ID: 1; *COMPND 2 MOLECULE: RUBREDOXIN; *COMPND 3 CHAIN: A; *COMPND 4 ENGINEERED: YES; *COMPND 5 OTHER_DETAILS: IRON-SULFUR-PROTEIN,ZINC SUBSTITUTED *SOURCE MOL_ID: 1; *SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO GIGAS; *SOURCE 3 CELLULAR_LOCATION: CYTOPLASM; *SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; *SOURCE 5 EXPRESSION_SYSTEM_STRAIN: JM109; *SOURCE 6 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; *SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRPPL1; *SOURCE 8 EXPRESSION_SYSTEM_GENE: RDDG *KEYWDS IRON-SULFUR-PROTEIN, ZINC-SUBSTITUTION, THERMOSTABILITY *EXPDTA NMR, 20 STRUCTURES *AUTHOR P.LAMOSA,L.BRENNAN,H.VIS,D.L.TURNER,H.SANTOS *REVDAT 1 25-SEP-00 1E8J 0 ; save_