data_3Q2X # _entry.id 3Q2X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3Q2X pdb_00003q2x 10.2210/pdb3q2x/pdb RCSB RCSB063126 ? ? WWPDB D_1000063126 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-10-12 2 'Structure model' 1 1 2011-11-30 3 'Structure model' 1 2 2017-09-13 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Structure summary' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity 2 3 'Structure model' entity_name_com 3 3 'Structure model' pdbx_entity_src_syn 4 3 'Structure model' struct_ref 5 3 'Structure model' struct_ref_seq 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_entity.pdbx_description' 2 3 'Structure model' '_entity.pdbx_fragment' 3 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 4 3 'Structure model' '_pdbx_entity_src_syn.organism_common_name' 5 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 6 3 'Structure model' '_pdbx_entity_src_syn.pdbx_beg_seq_num' 7 3 'Structure model' '_pdbx_entity_src_syn.pdbx_end_seq_num' 8 3 'Structure model' '_struct_ref.db_code' 9 3 'Structure model' '_struct_ref.db_name' 10 3 'Structure model' '_struct_ref.pdbx_align_begin' 11 3 'Structure model' '_struct_ref.pdbx_db_accession' 12 3 'Structure model' '_struct_ref_seq.db_align_beg' 13 3 'Structure model' '_struct_ref_seq.db_align_end' 14 3 'Structure model' '_struct_ref_seq.pdbx_db_accession' 15 4 'Structure model' '_database_2.pdbx_DOI' 16 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 3Q2X _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-12-20 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Soriaga, A.B.' 1 'Sawaya, M.R.' 2 'Eisenberg, D.' 3 # _citation.id primary _citation.title 'Molecular basis for amyloid-beta polymorphism.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 16938 _citation.page_last 16943 _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21949245 _citation.pdbx_database_id_DOI 10.1073/pnas.1112600108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Colletier, J.P.' 1 ? primary 'Laganowsky, A.' 2 ? primary 'Landau, M.' 3 ? primary 'Zhao, M.' 4 ? primary 'Soriaga, A.B.' 5 ? primary 'Goldschmidt, L.' 6 ? primary 'Flot, D.' 7 ? primary 'Cascio, D.' 8 ? primary 'Sawaya, M.R.' 9 ? primary 'Eisenberg, D.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Amyloid beta A4 protein' 615.743 1 ? ? 'NKGAII hexapeptide segment (UNP residues 698-703)' ? 2 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;ABPP,APPI,APP,Alzheimer disease amyloid protein,Amyloid precursor protein,Beta-amyloid precursor protein,Cerebral vascular amyloid peptide,CVAP,PreA4,Protease nexin-II,PN-II ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code NKGAII _entity_poly.pdbx_seq_one_letter_code_can NKGAII _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 LYS n 1 3 GLY n 1 4 ALA n 1 5 ILE n 1 6 ILE n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'NKGAII (residues 27-32) from human Amyloid beta, synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 1 1 ASN ASN A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ILE 6 6 6 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 7 1 HOH HOH A . B 2 HOH 2 8 2 HOH HOH A . # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER . ? program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 PHENIX 1.6.1_357 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # _cell.length_a 15.074 _cell.length_b 4.838 _cell.length_c 24.016 _cell.angle_alpha 90.000 _cell.angle_beta 95.560 _cell.angle_gamma 90.000 _cell.entry_id 3Q2X _cell.pdbx_unique_axis ? _cell.Z_PDB 2 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 3Q2X _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3Q2X _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.42 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 13.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details 'reservoir contained 2.4M Sodium Malonate, 15% v/v Glycerol, vapor diffusion, hanging drop, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-04-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-E # _reflns.entry_id 3Q2X _reflns.d_resolution_high 1.450 _reflns.d_resolution_low 100.000 _reflns.number_obs 671 _reflns.pdbx_Rmerge_I_obs 0.122 _reflns.pdbx_netI_over_sigmaI 11.300 _reflns.pdbx_chi_squared 1.070 _reflns.pdbx_redundancy 3.100 _reflns.percent_possible_obs 90.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all 671 _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.450 1.500 ? ? ? 0.322 ? ? 1.129 3.200 ? 70 94.600 1 1 1.500 1.560 ? ? ? 0.224 ? ? 1.003 2.900 ? 61 84.700 2 1 1.560 1.630 ? ? ? 0.169 ? ? 1.091 3.100 ? 55 75.300 3 1 1.630 1.720 ? ? ? 0.169 ? ? 1.006 3.000 ? 63 98.400 4 1 1.720 1.830 ? ? ? 0.135 ? ? 1.033 3.000 ? 63 96.900 5 1 1.830 1.970 ? ? ? 0.152 ? ? 1.099 3.500 ? 68 91.900 6 1 1.970 2.170 ? ? ? 0.137 ? ? 1.063 3.700 ? 75 98.700 7 1 2.170 2.480 ? ? ? 0.108 ? ? 1.070 3.200 ? 73 90.100 8 1 2.480 3.120 ? ? ? 0.127 ? ? 1.110 3.000 ? 66 94.300 9 1 3.120 100.000 ? ? ? 0.063 ? ? 1.073 2.900 ? 77 86.500 10 1 # _refine.entry_id 3Q2X _refine.ls_d_res_high 1.4510 _refine.ls_d_res_low 23.9030 _refine.pdbx_ls_sigma_F 0.310 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 88.7700 _refine.ls_number_reflns_obs 656 _refine.ls_number_reflns_all 656 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2095 _refine.ls_R_factor_R_work 0.2041 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2589 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.8200 _refine.ls_number_reflns_R_free 71 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 4.9282 _refine.solvent_model_param_bsol 80.0010 _refine.solvent_model_param_ksol 0.6000 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -3.4410 _refine.aniso_B[2][2] -3.6220 _refine.aniso_B[3][3] 2.0179 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.7136 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.8252 _refine.B_iso_max 13.080 _refine.B_iso_min 0.630 _refine.occupancy_max 1.000 _refine.occupancy_min 0.890 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 43 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 45 _refine_hist.d_res_high 1.4510 _refine_hist.d_res_low 23.9030 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 42 0.011 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 55 1.869 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 7 0.093 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 7 0.005 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16 7.450 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.4506 _refine_ls_shell.d_res_low ? _refine_ls_shell.pdbx_total_number_of_bins_used 1 _refine_ls_shell.percent_reflns_obs 89.0000 _refine_ls_shell.number_reflns_R_work 585 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2041 _refine_ls_shell.R_factor_R_free 0.2589 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 656 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3Q2X _struct.title 'Structure of an amyloid forming peptide NKGAII (residues 27-32) from amyloid beta' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3Q2X _struct_keywords.text 'amyloid protofibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code NKGAII _struct_ref.pdbx_align_begin 698 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3Q2X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P05067 _struct_ref_seq.db_align_beg 698 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 703 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_565 x,y+1,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4.8380000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 1_575 x,y+2,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9.6760000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 2_555 -x,y+1/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2.4190000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 5 'crystal symmetry operation' 2_565 -x,y+3/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 7.2570000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 6 'crystal symmetry operation' 2_575 -x,y+5/2,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 12.0950000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;The biological unit is a pair of beta sheets with the side chains interdigitating between the sheets. One sheet is constructed from unit cell translations along the b direction (i.e. X,Y+1,Z; X,Y+2,Z; X,Y+3,Z, etc.). The other sheet is constructed from symmetry operators -X+1,Y+1/2,-Z+1; -X+1,Y+3/2,-Z+1; -X+1,Y+5/2,-Z+1, etc. ; # _pdbx_phasing_MR.entry_id 3Q2X _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation ? _pdbx_phasing_MR.d_res_low_rotation ? _pdbx_phasing_MR.d_res_high_translation ? _pdbx_phasing_MR.d_res_low_translation ? _pdbx_phasing_MR.packing 0.000 _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 GLY N N N N 31 GLY CA C N N 32 GLY C C N N 33 GLY O O N N 34 GLY OXT O N N 35 GLY H H N N 36 GLY H2 H N N 37 GLY HA2 H N N 38 GLY HA3 H N N 39 GLY HXT H N N 40 HOH O O N N 41 HOH H1 H N N 42 HOH H2 H N N 43 ILE N N N N 44 ILE CA C N S 45 ILE C C N N 46 ILE O O N N 47 ILE CB C N S 48 ILE CG1 C N N 49 ILE CG2 C N N 50 ILE CD1 C N N 51 ILE OXT O N N 52 ILE H H N N 53 ILE H2 H N N 54 ILE HA H N N 55 ILE HB H N N 56 ILE HG12 H N N 57 ILE HG13 H N N 58 ILE HG21 H N N 59 ILE HG22 H N N 60 ILE HG23 H N N 61 ILE HD11 H N N 62 ILE HD12 H N N 63 ILE HD13 H N N 64 ILE HXT H N N 65 LYS N N N N 66 LYS CA C N S 67 LYS C C N N 68 LYS O O N N 69 LYS CB C N N 70 LYS CG C N N 71 LYS CD C N N 72 LYS CE C N N 73 LYS NZ N N N 74 LYS OXT O N N 75 LYS H H N N 76 LYS H2 H N N 77 LYS HA H N N 78 LYS HB2 H N N 79 LYS HB3 H N N 80 LYS HG2 H N N 81 LYS HG3 H N N 82 LYS HD2 H N N 83 LYS HD3 H N N 84 LYS HE2 H N N 85 LYS HE3 H N N 86 LYS HZ1 H N N 87 LYS HZ2 H N N 88 LYS HZ3 H N N 89 LYS HXT H N N 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 GLY N CA sing N N 29 GLY N H sing N N 30 GLY N H2 sing N N 31 GLY CA C sing N N 32 GLY CA HA2 sing N N 33 GLY CA HA3 sing N N 34 GLY C O doub N N 35 GLY C OXT sing N N 36 GLY OXT HXT sing N N 37 HOH O H1 sing N N 38 HOH O H2 sing N N 39 ILE N CA sing N N 40 ILE N H sing N N 41 ILE N H2 sing N N 42 ILE CA C sing N N 43 ILE CA CB sing N N 44 ILE CA HA sing N N 45 ILE C O doub N N 46 ILE C OXT sing N N 47 ILE CB CG1 sing N N 48 ILE CB CG2 sing N N 49 ILE CB HB sing N N 50 ILE CG1 CD1 sing N N 51 ILE CG1 HG12 sing N N 52 ILE CG1 HG13 sing N N 53 ILE CG2 HG21 sing N N 54 ILE CG2 HG22 sing N N 55 ILE CG2 HG23 sing N N 56 ILE CD1 HD11 sing N N 57 ILE CD1 HD12 sing N N 58 ILE CD1 HD13 sing N N 59 ILE OXT HXT sing N N 60 LYS N CA sing N N 61 LYS N H sing N N 62 LYS N H2 sing N N 63 LYS CA C sing N N 64 LYS CA CB sing N N 65 LYS CA HA sing N N 66 LYS C O doub N N 67 LYS C OXT sing N N 68 LYS CB CG sing N N 69 LYS CB HB2 sing N N 70 LYS CB HB3 sing N N 71 LYS CG CD sing N N 72 LYS CG HG2 sing N N 73 LYS CG HG3 sing N N 74 LYS CD CE sing N N 75 LYS CD HD2 sing N N 76 LYS CD HD3 sing N N 77 LYS CE NZ sing N N 78 LYS CE HE2 sing N N 79 LYS CE HE3 sing N N 80 LYS NZ HZ1 sing N N 81 LYS NZ HZ2 sing N N 82 LYS NZ HZ3 sing N N 83 LYS OXT HXT sing N N 84 # _atom_sites.entry_id 3Q2X _atom_sites.fract_transf_matrix[1][1] 0.066339 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006453 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.206697 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.041835 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . ASN A 1 1 ? 6.895 1.404 1.451 1.00 5.38 ? 1 ASN A N 1 ATOM 2 C CA . ASN A 1 1 ? 6.768 0.679 2.709 1.00 4.83 ? 1 ASN A CA 1 ATOM 3 C C . ASN A 1 1 ? 5.715 1.341 3.587 1.00 3.85 ? 1 ASN A C 1 ATOM 4 O O . ASN A 1 1 ? 5.591 2.565 3.595 1.00 3.39 ? 1 ASN A O 1 ATOM 5 C CB . ASN A 1 1 ? 8.114 0.619 3.450 1.00 4.93 ? 1 ASN A CB 1 ATOM 6 C CG . ASN A 1 1 ? 9.089 -0.336 2.802 1.00 7.21 ? 1 ASN A CG 1 ATOM 7 O OD1 . ASN A 1 1 ? 8.694 -1.167 1.985 1.00 9.33 ? 1 ASN A OD1 1 ATOM 8 N ND2 . ASN A 1 1 ? 10.370 -0.233 3.165 1.00 8.54 ? 1 ASN A ND2 1 ATOM 9 N N . LYS A 1 2 ? 4.945 0.526 4.303 1.00 1.08 ? 2 LYS A N 1 ATOM 10 C CA . LYS A 1 2 ? 3.957 1.042 5.239 1.00 1.33 ? 2 LYS A CA 1 ATOM 11 C C . LYS A 1 2 ? 4.131 0.336 6.550 1.00 1.85 ? 2 LYS A C 1 ATOM 12 O O . LYS A 1 2 ? 4.304 -0.896 6.601 1.00 1.34 ? 2 LYS A O 1 ATOM 13 C CB . LYS A 1 2 ? 2.526 0.764 4.778 1.00 3.19 ? 2 LYS A CB 1 ATOM 14 C CG . LYS A 1 2 ? 2.098 1.367 3.475 1.00 5.85 ? 2 LYS A CG 1 ATOM 15 C CD . LYS A 1 2 ? 0.603 1.011 3.289 1.00 7.51 ? 2 LYS A CD 1 ATOM 16 C CE . LYS A 1 2 ? 0.041 1.339 1.938 1.00 8.57 ? 2 LYS A CE 1 ATOM 17 N NZ . LYS A 1 2 ? -1.430 1.041 1.971 1.00 9.57 ? 2 LYS A NZ 1 ATOM 18 N N . GLY A 1 3 ? 4.030 1.100 7.623 1.00 1.62 ? 3 GLY A N 1 ATOM 19 C CA . GLY A 1 3 ? 4.175 0.510 8.933 1.00 2.74 ? 3 GLY A CA 1 ATOM 20 C C . GLY A 1 3 ? 3.287 1.223 9.916 1.00 1.81 ? 3 GLY A C 1 ATOM 21 O O . GLY A 1 3 ? 3.141 2.447 9.885 1.00 1.35 ? 3 GLY A O 1 ATOM 22 N N . ALA A 1 4 ? 2.682 0.445 10.792 1.00 1.14 ? 4 ALA A N 1 ATOM 23 C CA . ALA A 1 4 ? 1.943 1.012 11.889 1.00 1.05 ? 4 ALA A CA 1 ATOM 24 C C . ALA A 1 4 ? 2.467 0.350 13.134 1.00 0.63 ? 4 ALA A C 1 ATOM 25 O O . ALA A 1 4 ? 2.549 -0.873 13.197 1.00 0.91 ? 4 ALA A O 1 ATOM 26 C CB . ALA A 1 4 ? 0.453 0.740 11.715 1.00 2.59 ? 4 ALA A CB 1 ATOM 27 N N . ILE A 1 5 ? 2.872 1.170 14.100 1.00 1.13 ? 5 ILE A N 1 ATOM 28 C CA . ILE A 1 5 ? 3.256 0.695 15.413 1.00 2.42 ? 5 ILE A CA 1 ATOM 29 C C . ILE A 1 5 ? 2.243 1.317 16.368 1.00 3.46 ? 5 ILE A C 1 ATOM 30 O O . ILE A 1 5 ? 2.169 2.543 16.495 1.00 4.86 ? 5 ILE A O 1 ATOM 31 C CB . ILE A 1 5 ? 4.696 1.123 15.794 1.00 2.27 ? 5 ILE A CB 1 ATOM 32 C CG1 . ILE A 1 5 ? 5.725 0.508 14.837 1.00 3.67 ? 5 ILE A CG1 1 ATOM 33 C CG2 . ILE A 1 5 ? 5.016 0.651 17.191 1.00 3.11 ? 5 ILE A CG2 1 ATOM 34 C CD1 . ILE A 1 5 ? 5.773 1.126 13.443 1.00 4.90 ? 5 ILE A CD1 1 ATOM 35 N N . ILE A 1 6 ? 1.437 0.477 17.005 0.89 2.28 ? 6 ILE A N 1 ATOM 36 C CA . ILE A 1 6 ? 0.323 0.965 17.811 0.89 4.89 ? 6 ILE A CA 1 ATOM 37 C C . ILE A 1 6 ? 0.365 0.332 19.185 0.89 6.89 ? 6 ILE A C 1 ATOM 38 O O . ILE A 1 6 ? 0.965 -0.729 19.354 0.89 8.11 ? 6 ILE A O 1 ATOM 39 C CB . ILE A 1 6 ? -1.039 0.606 17.157 0.89 8.73 ? 6 ILE A CB 1 ATOM 40 C CG1 . ILE A 1 6 ? -1.141 1.173 15.749 0.89 9.44 ? 6 ILE A CG1 1 ATOM 41 C CG2 . ILE A 1 6 ? -2.188 1.108 17.999 0.89 11.07 ? 6 ILE A CG2 1 ATOM 42 C CD1 . ILE A 1 6 ? -2.461 0.815 15.081 0.89 10.69 ? 6 ILE A CD1 1 ATOM 43 O OXT . ILE A 1 6 ? -0.201 0.856 20.143 0.89 9.51 ? 6 ILE A OXT 1 HETATM 44 O O . HOH B 2 . ? 9.306 1.322 -0.067 1.00 9.67 ? 7 HOH A O 1 HETATM 45 O O . HOH B 2 . ? 4.236 1.231 0.491 1.00 13.08 ? 8 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 N N . ASN A 1 ? 0.0407 0.1380 0.0255 0.0332 0.0289 -0.0001 1 ASN A N 2 C CA . ASN A 1 ? 0.0359 0.1271 0.0204 0.0441 0.0200 -0.0015 1 ASN A CA 3 C C . ASN A 1 ? 0.0310 0.1035 0.0118 0.0246 0.0008 -0.0057 1 ASN A C 4 O O . ASN A 1 ? 0.0344 0.0848 0.0095 0.0482 -0.0047 -0.0072 1 ASN A O 5 C CB . ASN A 1 ? 0.0517 0.1025 0.0330 0.0383 0.0296 0.0008 1 ASN A CB 6 C CG . ASN A 1 ? 0.0592 0.1704 0.0445 -0.0056 0.0288 -0.0176 1 ASN A CG 7 O OD1 . ASN A 1 ? 0.0708 0.2339 0.0497 -0.0046 0.0431 -0.0311 1 ASN A OD1 8 N ND2 . ASN A 1 ? 0.0675 0.2082 0.0489 -0.0314 0.0230 -0.0198 1 ASN A ND2 9 N N . LYS A 2 ? 0.0115 0.0195 0.0101 0.0025 -0.0025 0.0129 2 LYS A N 10 C CA . LYS A 2 ? 0.0182 0.0202 0.0119 0.0170 -0.0033 0.0031 2 LYS A CA 11 C C . LYS A 2 ? 0.0208 0.0383 0.0113 0.0120 0.0111 -0.0066 2 LYS A C 12 O O . LYS A 2 ? 0.0330 0.0015 0.0165 0.0071 0.0233 0.0050 2 LYS A O 13 C CB . LYS A 2 ? 0.0227 0.0698 0.0287 0.0304 -0.0157 0.0018 2 LYS A CB 14 C CG . LYS A 2 ? 0.0276 0.1529 0.0420 0.0365 -0.0300 -0.0087 2 LYS A CG 15 C CD . LYS A 2 ? 0.0311 0.1988 0.0556 0.0342 -0.0398 -0.0181 2 LYS A CD 16 C CE . LYS A 2 ? 0.0349 0.2230 0.0677 0.0341 -0.0416 -0.0340 2 LYS A CE 17 N NZ . LYS A 2 ? 0.0380 0.2508 0.0750 0.0286 -0.0464 -0.0352 2 LYS A NZ 18 N N . GLY A 3 ? 0.0262 0.0285 0.0066 0.0115 0.0128 0.0026 3 GLY A N 19 C CA . GLY A 3 ? 0.0230 0.0740 0.0071 0.0263 0.0122 0.0189 3 GLY A CA 20 C C . GLY A 3 ? 0.0033 0.0582 0.0075 0.0137 0.0049 0.0208 3 GLY A C 21 O O . GLY A 3 ? 0.0160 0.0273 0.0079 0.0206 0.0093 0.0134 3 GLY A O 22 N N . ALA A 4 ? 0.0003 0.0367 0.0064 -0.0031 -0.0013 0.0153 4 ALA A N 23 C CA . ALA A 4 ? 0.0010 0.0361 0.0030 -0.0041 -0.0002 0.0080 4 ALA A CA 24 C C . ALA A 4 ? 0.0044 0.0162 0.0035 -0.0014 0.0037 0.0010 4 ALA A C 25 O O . ALA A 4 ? 0.0206 0.0111 0.0030 0.0151 0.0079 0.0058 4 ALA A O 26 C CB . ALA A 4 ? 0.0067 0.0880 0.0036 0.0239 0.0037 0.0113 4 ALA A CB 27 N N . ILE A 5 ? 0.0210 0.0125 0.0093 0.0057 0.0106 -0.0037 5 ILE A N 28 C CA . ILE A 5 ? 0.0349 0.0496 0.0075 0.0368 -0.0029 -0.0119 5 ILE A CA 29 C C . ILE A 5 ? 0.0679 0.0501 0.0136 0.0487 0.0008 -0.0138 5 ILE A C 30 O O . ILE A 5 ? 0.1122 0.0565 0.0160 0.0480 0.0209 -0.0119 5 ILE A O 31 C CB . ILE A 5 ? 0.0279 0.0543 0.0040 0.0247 -0.0054 -0.0146 5 ILE A CB 32 C CG1 . ILE A 5 ? 0.0295 0.1085 0.0016 0.0198 -0.0069 -0.0057 5 ILE A CG1 33 C CG2 . ILE A 5 ? 0.0303 0.0854 0.0027 -0.0004 -0.0042 -0.0132 5 ILE A CG2 34 C CD1 . ILE A 5 ? 0.0268 0.1569 0.0027 0.0126 -0.0080 0.0025 5 ILE A CD1 35 N N . ILE A 6 ? 0.0263 0.0423 0.0182 0.0136 -0.0037 -0.0269 6 ILE A N 36 C CA . ILE A 6 ? 0.0430 0.1141 0.0285 0.0315 -0.0125 -0.0324 6 ILE A CA 37 C C . ILE A 6 ? 0.0747 0.1564 0.0307 0.0033 0.0027 -0.0517 6 ILE A C 38 O O . ILE A 6 ? 0.0997 0.1832 0.0254 0.0103 0.0035 -0.0239 6 ILE A O 39 C CB . ILE A 6 ? 0.0428 0.2441 0.0449 0.0631 -0.0215 -0.0318 6 ILE A CB 40 C CG1 . ILE A 6 ? 0.0445 0.2602 0.0539 0.0956 -0.0277 -0.0271 6 ILE A CG1 41 C CG2 . ILE A 6 ? 0.0458 0.3201 0.0549 0.0453 -0.0204 -0.0165 6 ILE A CG2 42 C CD1 . ILE A 6 ? 0.0665 0.2782 0.0615 0.1010 -0.0252 -0.0397 6 ILE A CD1 43 O OXT . ILE A 6 ? 0.0921 0.2290 0.0404 -0.0261 0.0143 -0.0481 6 ILE A OXT 44 O O . HOH B . ? 0.2099 0.1146 0.0429 0.0173 -0.0392 -0.0290 7 HOH A O #