data_1KCI
#
_entry.id 1KCI
#
_citation.id primary
_citation.title
'Crystal structure of 9-amino-N-[2-(4-morpholinyl)ethyl]-4-acridinecarboxamide bound to d(CGTACG)2: implications for structure-activity relationships of acridinecarboxamide topoisomerase poisons.'
_citation.journal_abbrev 'Nucleic Acids Res.'
_citation.journal_volume 30
_citation.page_first 719
_citation.page_last 725
_citation.year 2002
_citation.journal_id_ASTM NARHAD
_citation.country UK
_citation.journal_id_ISSN 0305-1048
_citation.journal_id_CSD 0389
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 11809884
_citation.pdbx_database_id_DOI 10.1093/nar/30.3.719
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Adams, A.' 1 ?
primary 'Guss, J.M.' 2 ?
primary 'Denny, W.A.' 3 ?
primary 'Wakelin, L.P.' 4 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn "5'-D(*CP*GP*TP*AP*CP*G)-3'" 1809.217 1 ? ? ? ?
2 non-polymer syn '9-AMINO-N-[2-(4-MORPHOLINYL)ETHYL]-4-ACRIDINECARBOXAMIDE' 350.414 2 ? ? ? ?
3 water nat water 18.015 20 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)'
_entity_poly.pdbx_seq_one_letter_code_can CGTACG
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 '9-AMINO-N-[2-(4-MORPHOLINYL)ETHYL]-4-ACRIDINECARBOXAMIDE' DRC
3 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DC n
1 2 DG n
1 3 DT n
1 4 DA n
1 5 DC n
1 6 DG n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DRC non-polymer . '9-AMINO-N-[2-(4-MORPHOLINYL)ETHYL]-4-ACRIDINECARBOXAMIDE' ? 'C20 H22 N4 O2' 350.414
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
HOH non-polymer . WATER ? 'H2 O' 18.015
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DC 1 1001 1001 DC C A . n
A 1 2 DG 2 1002 1002 DG G A . n
A 1 3 DT 3 1003 1003 DT T A . n
A 1 4 DA 4 1004 1004 DA A A . n
A 1 5 DC 5 1005 1005 DC C A . n
A 1 6 DG 6 1006 1006 DG G A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DRC 1 3014 3014 DRC DRC A .
C 2 DRC 1 3015 3015 DRC DRC A .
D 3 HOH 1 4001 4001 HOH HOH A .
D 3 HOH 2 4002 4002 HOH HOH A .
D 3 HOH 3 4003 4003 HOH HOH A .
D 3 HOH 4 4004 4004 HOH HOH A .
D 3 HOH 5 4005 4005 HOH HOH A .
D 3 HOH 6 4006 4006 HOH HOH A .
D 3 HOH 7 4007 4007 HOH HOH A .
D 3 HOH 8 4008 4008 HOH HOH A .
D 3 HOH 9 4009 4009 HOH HOH A .
D 3 HOH 10 4010 4010 HOH HOH A .
D 3 HOH 11 4011 4011 HOH HOH A .
D 3 HOH 12 4012 4012 HOH HOH A .
D 3 HOH 13 4013 4013 HOH HOH A .
D 3 HOH 14 4014 4014 HOH HOH A .
D 3 HOH 15 4015 4015 HOH HOH A .
D 3 HOH 16 4016 4016 HOH HOH A .
D 3 HOH 17 4017 4017 HOH HOH A .
D 3 HOH 18 4018 4018 HOH HOH A .
D 3 HOH 19 4019 4019 HOH HOH A .
D 3 HOH 20 4020 4020 HOH HOH A .
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
SHELXL-97 refinement . ? 1
DENZO 'data reduction' . ? 2
SCALEPACK 'data scaling' . ? 3
#
_cell.entry_id 1KCI
_cell.length_a 30.239
_cell.length_b 30.239
_cell.length_c 39.340
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 6
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1KCI
_symmetry.space_group_name_H-M 'P 64'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 172
#
_exptl.entry_id 1KCI
_exptl.method 'X-ray diffraction'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.75
_exptl_crystal.density_percent_sol 55.25
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 285
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 6.0
_exptl_crystal_grow.pdbx_details
'cacodylate, spermine, KCl, MgCl2, MPD, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 285K'
_exptl_crystal_grow.pdbx_pH_range ?
#
loop_
_exptl_crystal_grow_comp.crystal_id
_exptl_crystal_grow_comp.id
_exptl_crystal_grow_comp.sol_id
_exptl_crystal_grow_comp.name
_exptl_crystal_grow_comp.volume
_exptl_crystal_grow_comp.conc
_exptl_crystal_grow_comp.details
1 1 1 cacodylate ? ? ?
1 2 1 spermine ? ? ?
1 3 1 KCl ? ? ?
1 4 1 MgCl2 ? ? ?
1 5 1 MPD ? ? ?
#
_diffrn.id 1
_diffrn.ambient_temp 110
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'Image plate'
_diffrn_detector.type 'RIGAKU RAXIS II'
_diffrn_detector.pdbx_collection_date 2000-08-01
_diffrn_detector.details 'focusing mirror'
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'Single wavelength'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'Rotating anode'
_diffrn_source.type 'RIGAKU RU200'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.5418
#
_reflns.entry_id 1KCI
_reflns.observed_criterion_sigma_I 0.0
_reflns.observed_criterion_sigma_F 0.0
_reflns.d_resolution_low 40
_reflns.d_resolution_high 1.8
_reflns.number_obs 1951
_reflns.number_all 1951
_reflns.percent_possible_obs 99.8
_reflns.pdbx_Rmerge_I_obs ?
_reflns.pdbx_Rsym_value 0.0940000
_reflns.pdbx_netI_over_sigmaI 21.5
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 7.7
_reflns.R_free_details ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.80
_reflns_shell.d_res_low 1.86
_reflns_shell.percent_possible_all 100
_reflns_shell.Rmerge_I_obs ?
_reflns_shell.pdbx_Rsym_value 0.3500000
_reflns_shell.meanI_over_sigI_obs 5.0
_reflns_shell.pdbx_redundancy 6.6
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all 195
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 1KCI
_refine.ls_number_reflns_obs 1931
_refine.ls_number_reflns_all 1931
_refine.pdbx_ls_sigma_I 0.0
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_d_res_low 40
_refine.ls_d_res_high 1.8
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.2190000
_refine.ls_R_factor_all 0.2190000
_refine.ls_R_factor_R_work 0.2150000
_refine.ls_R_factor_R_free 0.2910000
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free 143
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean 28
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method 'FREE R-VALUE'
_refine.details ?
_refine.pdbx_starting_model 'NDB entry DD0015'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model isotropic
_refine.pdbx_stereochemistry_target_values 'SHELX 2000 DNA dictioary'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details Random
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_refine_id 'X-ray diffraction'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-ray diffraction'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 120
_refine_hist.pdbx_number_atoms_ligand 52
_refine_hist.number_atoms_solvent 20
_refine_hist.number_atoms_total 192
_refine_hist.d_res_high 1.8
_refine_hist.d_res_low 40
#
_pdbx_refine.entry_id 1KCI
_pdbx_refine.R_factor_all_no_cutoff 0.2190000
_pdbx_refine.R_factor_obs_no_cutoff 0.2150000
_pdbx_refine.free_R_factor_no_cutoff 0.2910000
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ?
_pdbx_refine.free_R_val_test_set_ct_no_cutoff ?
_pdbx_refine.R_factor_all_4sig_cutoff ?
_pdbx_refine.R_factor_obs_4sig_cutoff ?
_pdbx_refine.free_R_factor_4sig_cutoff ?
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ?
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ?
_pdbx_refine.number_reflns_obs_4sig_cutoff ?
_pdbx_refine.number_reflns_obs_no_cutoff ?
_pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine.free_R_error_no_cutoff ?
#
_struct.entry_id 1KCI
_struct.title 'Crystal Structure of 9-amino-N-[2-(4-morpholinyl)ethyl]-4-acridinecarboxamide Bound to d(CGTACG)2'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1KCI
_struct_keywords.pdbx_keywords DNA
_struct_keywords.text 'DNA, intercalator, aminoacridinecarboxamide'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 2 ?
D N N 3 ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1KCI
_struct_ref.pdbx_db_accession 1KCI
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1KCI
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 6
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1KCI
_struct_ref_seq.db_align_beg 1001
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 1006
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1001
_struct_ref_seq.pdbx_auth_seq_align_end 1006
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1,2
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 30.2390000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1001 A DG 1006 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 1002 A DC 1005 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 1003 A DA 1004 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 1003 A DA 1004 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 1004 A DT 1003 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 1004 A DT 1003 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 1005 A DG 1002 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 1006 A DC 1001 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
_struct_conn_type.id hydrog
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A DRC 3014 ? 11 'BINDING SITE FOR RESIDUE DRC A 3014'
AC2 Software A DRC 3015 ? 6 'BINDING SITE FOR RESIDUE DRC A 3015'
1 ? ? ? ? ? ? ?
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 11 DC A 1 ? DC A 1001 . ? 1_555 ?
2 AC1 11 DG A 2 ? DG A 1002 . ? 1_555 ?
3 AC1 11 DG A 2 ? DG A 1002 . ? 3_664 ?
4 AC1 11 DT A 3 ? DT A 1003 . ? 1_555 ?
5 AC1 11 DA A 4 ? DA A 1004 . ? 2_655 ?
6 AC1 11 DC A 5 ? DC A 1005 . ? 4_655 ?
7 AC1 11 DG A 6 ? DG A 1006 . ? 4_655 ?
8 AC1 11 DRC C . ? DRC A 3015 . ? 4_655 ?
9 AC1 11 HOH D . ? HOH A 4016 . ? 2_655 ?
10 AC1 11 HOH D . ? HOH A 4019 . ? 4_655 ?
11 AC1 11 HOH D . ? HOH A 4019 . ? 1_555 ?
12 AC2 6 DC A 1 ? DC A 1001 . ? 4_655 ?
13 AC2 6 DC A 1 ? DC A 1001 . ? 1_445 ?
14 AC2 6 DG A 6 ? DG A 1006 . ? 4_545 ?
15 AC2 6 DG A 6 ? DG A 1006 . ? 1_555 ?
16 AC2 6 DRC B . ? DRC A 3014 . ? 4_655 ?
17 AC2 6 HOH D . ? HOH A 4011 . ? 1_555 ?
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 "C2'" A DC 1001 ? ? "C1'" A DC 1001 ? ? 1.638 1.519 0.119 0.010 N
2 1 "O4'" A DC 1001 ? ? "C1'" A DC 1001 ? ? 1.497 1.420 0.077 0.011 N
3 1 "O3'" A DC 1001 ? ? "C3'" A DC 1001 ? ? 1.365 1.419 -0.054 0.006 N
4 1 "O3'" A DC 1001 ? ? P A DG 1002 ? ? 1.720 1.607 0.113 0.012 Y
5 1 P A DG 1002 ? ? "O5'" A DG 1002 ? ? 1.668 1.593 0.075 0.010 N
6 1 "C2'" A DG 1002 ? ? "C1'" A DG 1002 ? ? 1.645 1.519 0.126 0.010 N
7 1 "O3'" A DG 1002 ? ? "C3'" A DG 1002 ? ? 1.357 1.419 -0.062 0.006 N
8 1 "O3'" A DG 1002 ? ? P A DT 1003 ? ? 1.725 1.607 0.118 0.012 Y
9 1 P A DT 1003 ? ? "O5'" A DT 1003 ? ? 1.666 1.593 0.073 0.010 N
10 1 "C2'" A DT 1003 ? ? "C1'" A DT 1003 ? ? 1.661 1.519 0.142 0.010 N
11 1 "O3'" A DT 1003 ? ? "C3'" A DT 1003 ? ? 1.349 1.419 -0.070 0.006 N
12 1 "O3'" A DT 1003 ? ? P A DA 1004 ? ? 1.717 1.607 0.110 0.012 Y
13 1 P A DA 1004 ? ? "O5'" A DA 1004 ? ? 1.673 1.593 0.080 0.010 N
14 1 "C2'" A DA 1004 ? ? "C1'" A DA 1004 ? ? 1.641 1.519 0.122 0.010 N
15 1 "O3'" A DA 1004 ? ? "C3'" A DA 1004 ? ? 1.362 1.419 -0.057 0.006 N
16 1 "O3'" A DA 1004 ? ? P A DC 1005 ? ? 1.739 1.607 0.132 0.012 Y
17 1 P A DC 1005 ? ? "O5'" A DC 1005 ? ? 1.660 1.593 0.067 0.010 N
18 1 "C2'" A DC 1005 ? ? "C1'" A DC 1005 ? ? 1.659 1.519 0.140 0.010 N
19 1 "O3'" A DC 1005 ? ? "C3'" A DC 1005 ? ? 1.367 1.419 -0.052 0.006 N
20 1 "O3'" A DC 1005 ? ? P A DG 1006 ? ? 1.737 1.607 0.130 0.012 Y
21 1 P A DG 1006 ? ? "O5'" A DG 1006 ? ? 1.660 1.593 0.067 0.010 N
22 1 "C2'" A DG 1006 ? ? "C1'" A DG 1006 ? ? 1.647 1.519 0.128 0.010 N
23 1 "O3'" A DG 1006 ? ? "C3'" A DG 1006 ? ? 1.363 1.419 -0.056 0.006 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O5'" A DC 1001 ? ? "C5'" A DC 1001 ? ? "C4'" A DC 1001 ? ? 102.90 109.40 -6.50 0.80 N
2 1 "C5'" A DC 1001 ? ? "C4'" A DC 1001 ? ? "O4'" A DC 1001 ? ? 117.70 109.80 7.90 1.10 N
3 1 "C4'" A DC 1001 ? ? "C3'" A DC 1001 ? ? "C2'" A DC 1001 ? ? 112.46 103.10 9.36 0.90 N
4 1 "C3'" A DC 1001 ? ? "C2'" A DC 1001 ? ? "C1'" A DC 1001 ? ? 95.51 102.40 -6.89 0.80 N
5 1 "O4'" A DC 1001 ? ? "C1'" A DC 1001 ? ? "C2'" A DC 1001 ? ? 111.57 106.80 4.77 0.50 N
6 1 "O4'" A DC 1001 ? ? "C1'" A DC 1001 ? ? N1 A DC 1001 ? ? 103.21 108.00 -4.79 0.70 N
7 1 "O5'" A DG 1002 ? ? "C5'" A DG 1002 ? ? "C4'" A DG 1002 ? ? 99.45 109.40 -9.95 0.80 N
8 1 P A DG 1002 ? ? "O5'" A DG 1002 ? ? "C5'" A DG 1002 ? ? 109.23 120.90 -11.67 1.60 N
9 1 "C5'" A DG 1002 ? ? "C4'" A DG 1002 ? ? "O4'" A DG 1002 ? ? 119.12 109.80 9.32 1.10 N
10 1 "C4'" A DG 1002 ? ? "C3'" A DG 1002 ? ? "C2'" A DG 1002 ? ? 110.96 103.10 7.86 0.90 N
11 1 "C3'" A DG 1002 ? ? "C2'" A DG 1002 ? ? "C1'" A DG 1002 ? ? 95.86 102.40 -6.54 0.80 N
12 1 "O4'" A DG 1002 ? ? "C1'" A DG 1002 ? ? "C2'" A DG 1002 ? ? 110.78 106.80 3.98 0.50 N
13 1 "O5'" A DT 1003 ? ? "C5'" A DT 1003 ? ? "C4'" A DT 1003 ? ? 98.62 109.40 -10.78 0.80 N
14 1 P A DT 1003 ? ? "O5'" A DT 1003 ? ? "C5'" A DT 1003 ? ? 105.93 120.90 -14.97 1.60 N
15 1 "C5'" A DT 1003 ? ? "C4'" A DT 1003 ? ? "O4'" A DT 1003 ? ? 116.85 109.80 7.05 1.10 N
16 1 "C4'" A DT 1003 ? ? "C3'" A DT 1003 ? ? "C2'" A DT 1003 ? ? 110.09 103.10 6.99 0.90 N
17 1 "C3'" A DT 1003 ? ? "C2'" A DT 1003 ? ? "C1'" A DT 1003 ? ? 91.21 102.40 -11.19 0.80 N
18 1 "O4'" A DT 1003 ? ? "C1'" A DT 1003 ? ? "C2'" A DT 1003 ? ? 109.93 106.80 3.13 0.50 N
19 1 "C3'" A DT 1003 ? ? "O3'" A DT 1003 ? ? P A DA 1004 ? ? 131.21 119.70 11.51 1.20 Y
20 1 "O5'" A DA 1004 ? ? "C5'" A DA 1004 ? ? "C4'" A DA 1004 ? ? 99.86 109.40 -9.54 0.80 N
21 1 "C5'" A DA 1004 ? ? "C4'" A DA 1004 ? ? "O4'" A DA 1004 ? ? 117.00 109.80 7.20 1.10 N
22 1 "C4'" A DA 1004 ? ? "C3'" A DA 1004 ? ? "C2'" A DA 1004 ? ? 111.17 103.10 8.07 0.90 N
23 1 "C3'" A DA 1004 ? ? "C2'" A DA 1004 ? ? "C1'" A DA 1004 ? ? 94.97 102.40 -7.43 0.80 N
24 1 "O4'" A DA 1004 ? ? "C1'" A DA 1004 ? ? "C2'" A DA 1004 ? ? 111.75 106.80 4.95 0.50 N
25 1 "O5'" A DC 1005 ? ? "C5'" A DC 1005 ? ? "C4'" A DC 1005 ? ? 100.75 109.40 -8.65 0.80 N
26 1 P A DC 1005 ? ? "O5'" A DC 1005 ? ? "C5'" A DC 1005 ? ? 110.65 120.90 -10.25 1.60 N
27 1 "C5'" A DC 1005 ? ? "C4'" A DC 1005 ? ? "O4'" A DC 1005 ? ? 117.24 109.80 7.44 1.10 N
28 1 "C4'" A DC 1005 ? ? "C3'" A DC 1005 ? ? "C2'" A DC 1005 ? ? 111.18 103.10 8.08 0.90 N
29 1 "C3'" A DC 1005 ? ? "C2'" A DC 1005 ? ? "C1'" A DC 1005 ? ? 92.58 102.40 -9.82 0.80 N
30 1 "O5'" A DG 1006 ? ? "C5'" A DG 1006 ? ? "C4'" A DG 1006 ? ? 100.17 109.40 -9.23 0.80 N
31 1 P A DG 1006 ? ? "O5'" A DG 1006 ? ? "C5'" A DG 1006 ? ? 105.46 120.90 -15.44 1.60 N
32 1 "C4'" A DG 1006 ? ? "C3'" A DG 1006 ? ? "C2'" A DG 1006 ? ? 110.44 103.10 7.34 0.90 N
33 1 "C3'" A DG 1006 ? ? "C2'" A DG 1006 ? ? "C1'" A DG 1006 ? ? 94.07 102.40 -8.33 0.80 N
34 1 "O4'" A DG 1006 ? ? "C1'" A DG 1006 ? ? "C2'" A DG 1006 ? ? 113.01 106.80 6.21 0.50 N
#
_struct_site_keywords.site_id 1
_struct_site_keywords.text INTERCALATION
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 4009 ? D HOH .
2 1 A HOH 4019 ? D HOH .
3 1 A HOH 4020 ? D HOH .
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
DA OP3 O N N 1
DA P P N N 2
DA OP1 O N N 3
DA OP2 O N N 4
DA "O5'" O N N 5
DA "C5'" C N N 6
DA "C4'" C N R 7
DA "O4'" O N N 8
DA "C3'" C N S 9
DA "O3'" O N N 10
DA "C2'" C N N 11
DA "C1'" C N R 12
DA N9 N Y N 13
DA C8 C Y N 14
DA N7 N Y N 15
DA C5 C Y N 16
DA C6 C Y N 17
DA N6 N N N 18
DA N1 N Y N 19
DA C2 C Y N 20
DA N3 N Y N 21
DA C4 C Y N 22
DA HOP3 H N N 23
DA HOP2 H N N 24
DA "H5'" H N N 25
DA "H5''" H N N 26
DA "H4'" H N N 27
DA "H3'" H N N 28
DA "HO3'" H N N 29
DA "H2'" H N N 30
DA "H2''" H N N 31
DA "H1'" H N N 32
DA H8 H N N 33
DA H61 H N N 34
DA H62 H N N 35
DA H2 H N N 36
DC OP3 O N N 37
DC P P N N 38
DC OP1 O N N 39
DC OP2 O N N 40
DC "O5'" O N N 41
DC "C5'" C N N 42
DC "C4'" C N R 43
DC "O4'" O N N 44
DC "C3'" C N S 45
DC "O3'" O N N 46
DC "C2'" C N N 47
DC "C1'" C N R 48
DC N1 N N N 49
DC C2 C N N 50
DC O2 O N N 51
DC N3 N N N 52
DC C4 C N N 53
DC N4 N N N 54
DC C5 C N N 55
DC C6 C N N 56
DC HOP3 H N N 57
DC HOP2 H N N 58
DC "H5'" H N N 59
DC "H5''" H N N 60
DC "H4'" H N N 61
DC "H3'" H N N 62
DC "HO3'" H N N 63
DC "H2'" H N N 64
DC "H2''" H N N 65
DC "H1'" H N N 66
DC H41 H N N 67
DC H42 H N N 68
DC H5 H N N 69
DC H6 H N N 70
DG OP3 O N N 71
DG P P N N 72
DG OP1 O N N 73
DG OP2 O N N 74
DG "O5'" O N N 75
DG "C5'" C N N 76
DG "C4'" C N R 77
DG "O4'" O N N 78
DG "C3'" C N S 79
DG "O3'" O N N 80
DG "C2'" C N N 81
DG "C1'" C N R 82
DG N9 N Y N 83
DG C8 C Y N 84
DG N7 N Y N 85
DG C5 C Y N 86
DG C6 C N N 87
DG O6 O N N 88
DG N1 N N N 89
DG C2 C N N 90
DG N2 N N N 91
DG N3 N N N 92
DG C4 C Y N 93
DG HOP3 H N N 94
DG HOP2 H N N 95
DG "H5'" H N N 96
DG "H5''" H N N 97
DG "H4'" H N N 98
DG "H3'" H N N 99
DG "HO3'" H N N 100
DG "H2'" H N N 101
DG "H2''" H N N 102
DG "H1'" H N N 103
DG H8 H N N 104
DG H1 H N N 105
DG H21 H N N 106
DG H22 H N N 107
DRC O24 O N N 108
DRC C20 C N N 109
DRC C21 C N N 110
DRC C22 C N N 111
DRC C23 C N N 112
DRC N19 N N N 113
DRC C18 C N N 114
DRC C17 C N N 115
DRC N16 N N N 116
DRC C15 C N N 117
DRC O15 O N N 118
DRC N9 N N N 119
DRC C4 C Y N 120
DRC C3 C Y N 121
DRC C2 C Y N 122
DRC C1 C Y N 123
DRC C11 C Y N 124
DRC C12 C Y N 125
DRC C9 C Y N 126
DRC C13 C Y N 127
DRC C14 C Y N 128
DRC N10 N Y N 129
DRC C8 C Y N 130
DRC C7 C Y N 131
DRC C6 C Y N 132
DRC C5 C Y N 133
DRC H201 H N N 134
DRC H202 H N N 135
DRC H211 H N N 136
DRC H212 H N N 137
DRC H221 H N N 138
DRC H222 H N N 139
DRC H231 H N N 140
DRC H232 H N N 141
DRC H181 H N N 142
DRC H182 H N N 143
DRC H171 H N N 144
DRC H172 H N N 145
DRC H16 H N N 146
DRC HN91 H N N 147
DRC HN92 H N N 148
DRC HC3 H N N 149
DRC HC2 H N N 150
DRC HC1 H N N 151
DRC HC8 H N N 152
DRC HC7 H N N 153
DRC HC6 H N N 154
DRC HC5 H N N 155
DT OP3 O N N 156
DT P P N N 157
DT OP1 O N N 158
DT OP2 O N N 159
DT "O5'" O N N 160
DT "C5'" C N N 161
DT "C4'" C N R 162
DT "O4'" O N N 163
DT "C3'" C N S 164
DT "O3'" O N N 165
DT "C2'" C N N 166
DT "C1'" C N R 167
DT N1 N N N 168
DT C2 C N N 169
DT O2 O N N 170
DT N3 N N N 171
DT C4 C N N 172
DT O4 O N N 173
DT C5 C N N 174
DT C7 C N N 175
DT C6 C N N 176
DT HOP3 H N N 177
DT HOP2 H N N 178
DT "H5'" H N N 179
DT "H5''" H N N 180
DT "H4'" H N N 181
DT "H3'" H N N 182
DT "HO3'" H N N 183
DT "H2'" H N N 184
DT "H2''" H N N 185
DT "H1'" H N N 186
DT H3 H N N 187
DT H71 H N N 188
DT H72 H N N 189
DT H73 H N N 190
DT H6 H N N 191
HOH O O N N 192
HOH H1 H N N 193
HOH H2 H N N 194
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DA OP3 P SING N N 1
DA OP3 HOP3 SING N N 2
DA P OP1 DOUB N N 3
DA P OP2 SING N N 4
DA P "O5'" SING N N 5
DA OP2 HOP2 SING N N 6
DA "O5'" "C5'" SING N N 7
DA "C5'" "C4'" SING N N 8
DA "C5'" "H5'" SING N N 9
DA "C5'" "H5''" SING N N 10
DA "C4'" "O4'" SING N N 11
DA "C4'" "C3'" SING N N 12
DA "C4'" "H4'" SING N N 13
DA "O4'" "C1'" SING N N 14
DA "C3'" "O3'" SING N N 15
DA "C3'" "C2'" SING N N 16
DA "C3'" "H3'" SING N N 17
DA "O3'" "HO3'" SING N N 18
DA "C2'" "C1'" SING N N 19
DA "C2'" "H2'" SING N N 20
DA "C2'" "H2''" SING N N 21
DA "C1'" N9 SING N N 22
DA "C1'" "H1'" SING N N 23
DA N9 C8 SING Y N 24
DA N9 C4 SING Y N 25
DA C8 N7 DOUB Y N 26
DA C8 H8 SING N N 27
DA N7 C5 SING Y N 28
DA C5 C6 SING Y N 29
DA C5 C4 DOUB Y N 30
DA C6 N6 SING N N 31
DA C6 N1 DOUB Y N 32
DA N6 H61 SING N N 33
DA N6 H62 SING N N 34
DA N1 C2 SING Y N 35
DA C2 N3 DOUB Y N 36
DA C2 H2 SING N N 37
DA N3 C4 SING Y N 38
DC OP3 P SING N N 1
DC OP3 HOP3 SING N N 2
DC P OP1 DOUB N N 3
DC P OP2 SING N N 4
DC P "O5'" SING N N 5
DC OP2 HOP2 SING N N 6
DC "O5'" "C5'" SING N N 7
DC "C5'" "C4'" SING N N 8
DC "C5'" "H5'" SING N N 9
DC "C5'" "H5''" SING N N 10
DC "C4'" "O4'" SING N N 11
DC "C4'" "C3'" SING N N 12
DC "C4'" "H4'" SING N N 13
DC "O4'" "C1'" SING N N 14
DC "C3'" "O3'" SING N N 15
DC "C3'" "C2'" SING N N 16
DC "C3'" "H3'" SING N N 17
DC "O3'" "HO3'" SING N N 18
DC "C2'" "C1'" SING N N 19
DC "C2'" "H2'" SING N N 20
DC "C2'" "H2''" SING N N 21
DC "C1'" N1 SING N N 22
DC "C1'" "H1'" SING N N 23
DC N1 C2 SING N N 24
DC N1 C6 SING N N 25
DC C2 O2 DOUB N N 26
DC C2 N3 SING N N 27
DC N3 C4 DOUB N N 28
DC C4 N4 SING N N 29
DC C4 C5 SING N N 30
DC N4 H41 SING N N 31
DC N4 H42 SING N N 32
DC C5 C6 DOUB N N 33
DC C5 H5 SING N N 34
DC C6 H6 SING N N 35
DG OP3 P SING N N 1
DG OP3 HOP3 SING N N 2
DG P OP1 DOUB N N 3
DG P OP2 SING N N 4
DG P "O5'" SING N N 5
DG OP2 HOP2 SING N N 6
DG "O5'" "C5'" SING N N 7
DG "C5'" "C4'" SING N N 8
DG "C5'" "H5'" SING N N 9
DG "C5'" "H5''" SING N N 10
DG "C4'" "O4'" SING N N 11
DG "C4'" "C3'" SING N N 12
DG "C4'" "H4'" SING N N 13
DG "O4'" "C1'" SING N N 14
DG "C3'" "O3'" SING N N 15
DG "C3'" "C2'" SING N N 16
DG "C3'" "H3'" SING N N 17
DG "O3'" "HO3'" SING N N 18
DG "C2'" "C1'" SING N N 19
DG "C2'" "H2'" SING N N 20
DG "C2'" "H2''" SING N N 21
DG "C1'" N9 SING N N 22
DG "C1'" "H1'" SING N N 23
DG N9 C8 SING Y N 24
DG N9 C4 SING Y N 25
DG C8 N7 DOUB Y N 26
DG C8 H8 SING N N 27
DG N7 C5 SING Y N 28
DG C5 C6 SING N N 29
DG C5 C4 DOUB Y N 30
DG C6 O6 DOUB N N 31
DG C6 N1 SING N N 32
DG N1 C2 SING N N 33
DG N1 H1 SING N N 34
DG C2 N2 SING N N 35
DG C2 N3 DOUB N N 36
DG N2 H21 SING N N 37
DG N2 H22 SING N N 38
DG N3 C4 SING N N 39
DRC O24 C21 SING N N 1
DRC O24 C23 SING N N 2
DRC C20 C21 SING N N 3
DRC C20 N19 SING N N 4
DRC C20 H201 SING N N 5
DRC C20 H202 SING N N 6
DRC C21 H211 SING N N 7
DRC C21 H212 SING N N 8
DRC C22 C23 SING N N 9
DRC C22 N19 SING N N 10
DRC C22 H221 SING N N 11
DRC C22 H222 SING N N 12
DRC C23 H231 SING N N 13
DRC C23 H232 SING N N 14
DRC N19 C18 SING N N 15
DRC C18 C17 SING N N 16
DRC C18 H181 SING N N 17
DRC C18 H182 SING N N 18
DRC C17 N16 SING N N 19
DRC C17 H171 SING N N 20
DRC C17 H172 SING N N 21
DRC N16 C15 SING N N 22
DRC N16 H16 SING N N 23
DRC C15 O15 DOUB N N 24
DRC C15 C4 SING N N 25
DRC N9 C9 SING N N 26
DRC N9 HN91 SING N N 27
DRC N9 HN92 SING N N 28
DRC C4 C3 DOUB Y N 29
DRC C4 C12 SING Y N 30
DRC C3 C2 SING Y N 31
DRC C3 HC3 SING N N 32
DRC C2 C1 DOUB Y N 33
DRC C2 HC2 SING N N 34
DRC C1 C11 SING Y N 35
DRC C1 HC1 SING N N 36
DRC C11 C12 DOUB Y N 37
DRC C11 C9 SING Y N 38
DRC C12 N10 SING Y N 39
DRC C9 C13 DOUB Y N 40
DRC C13 C14 SING Y N 41
DRC C13 C8 SING Y N 42
DRC C14 N10 DOUB Y N 43
DRC C14 C5 SING Y N 44
DRC C8 C7 DOUB Y N 45
DRC C8 HC8 SING N N 46
DRC C7 C6 SING Y N 47
DRC C7 HC7 SING N N 48
DRC C6 C5 DOUB Y N 49
DRC C6 HC6 SING N N 50
DRC C5 HC5 SING N N 51
DT OP3 P SING N N 1
DT OP3 HOP3 SING N N 2
DT P OP1 DOUB N N 3
DT P OP2 SING N N 4
DT P "O5'" SING N N 5
DT OP2 HOP2 SING N N 6
DT "O5'" "C5'" SING N N 7
DT "C5'" "C4'" SING N N 8
DT "C5'" "H5'" SING N N 9
DT "C5'" "H5''" SING N N 10
DT "C4'" "O4'" SING N N 11
DT "C4'" "C3'" SING N N 12
DT "C4'" "H4'" SING N N 13
DT "O4'" "C1'" SING N N 14
DT "C3'" "O3'" SING N N 15
DT "C3'" "C2'" SING N N 16
DT "C3'" "H3'" SING N N 17
DT "O3'" "HO3'" SING N N 18
DT "C2'" "C1'" SING N N 19
DT "C2'" "H2'" SING N N 20
DT "C2'" "H2''" SING N N 21
DT "C1'" N1 SING N N 22
DT "C1'" "H1'" SING N N 23
DT N1 C2 SING N N 24
DT N1 C6 SING N N 25
DT C2 O2 DOUB N N 26
DT C2 N3 SING N N 27
DT N3 C4 SING N N 28
DT N3 H3 SING N N 29
DT C4 O4 DOUB N N 30
DT C4 C5 SING N N 31
DT C5 C7 SING N N 32
DT C5 C6 DOUB N N 33
DT C7 H71 SING N N 34
DT C7 H72 SING N N 35
DT C7 H73 SING N N 36
DT C6 H6 SING N N 37
HOH O H1 SING N N 1
HOH O H2 SING N N 2
#
_ndb_struct_conf_na.entry_id 1KCI
_ndb_struct_conf_na.feature 'b-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 1 1_555 A DG 6 4_655 -0.068 -0.125 0.020 2.482 -12.144 -2.502 1 A_DC1001:DG1006_A A 1001 ? A 1006 ? 19 1
1 A DG 2 1_555 A DC 5 4_655 -0.211 -0.102 -0.089 -6.840 -2.296 1.355 2 A_DG1002:DC1005_A A 1002 ? A 1005 ? 19 1
1 A DT 3 1_555 A DA 4 4_655 -0.043 -0.158 -0.027 2.803 -11.915 -3.608 3 A_DT1003:DA1004_A A 1003 ? A 1004 ? 20 1
1 A DA 4 1_555 A DT 3 4_655 0.043 -0.158 -0.027 -2.803 -11.915 -3.608 4 A_DA1004:DT1003_A A 1004 ? A 1003 ? 20 1
1 A DC 5 1_555 A DG 2 4_655 0.211 -0.102 -0.089 6.840 -2.296 1.355 5 A_DC1005:DG1002_A A 1005 ? A 1002 ? 19 1
1 A DG 6 1_555 A DC 1 4_655 0.068 -0.125 0.020 -2.482 -12.144 -2.502 6 A_DG1006:DC1001_A A 1006 ? A 1001 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 1 1_555 A DG 6 4_655 A DG 2 1_555 A DC 5 4_655 0.519 0.576 6.958 -0.791 3.380 24.718 -0.824 -1.705 6.953 7.847 1.836 24.957 1 AA_DC1001DG1002:DC1005DG1006_AA A 1001 ? A 1006 ? A 1002 ? A 1005 ?
1 A DG 2 1_555 A DC 5 4_655 A DT 3 1_555 A DA 4 4_655 -0.730 -0.071 3.091 -0.150 3.081 28.415 -0.804 1.446 3.070 6.253 0.304 28.579 2 AA_DG1002DT1003:DA1004DC1005_AA A 1002 ? A 1005 ? A 1003 ? A 1004 ?
1 A DT 3 1_555 A DA 4 4_655 A DA 4 1_555 A DT 3 4_655 0.000 1.714 3.352 0.000 -4.743 47.819 2.479 0.000 3.178 -5.835 0.000 48.040 3 AA_DT1003DA1004:DT1003DA1004_AA A 1003 ? A 1004 ? A 1004 ? A 1003 ?
1 A DA 4 1_555 A DT 3 4_655 A DC 5 1_555 A DG 2 4_655 0.730 -0.071 3.091 0.150 3.081 28.415 -0.804 -1.446 3.070 6.253 -0.304 28.579 4 AA_DA1004DC1005:DG1002DT1003_AA A 1004 ? A 1003 ? A 1005 ? A 1002 ?
1 A DC 5 1_555 A DG 2 4_655 A DG 6 1_555 A DC 1 4_655 -0.519 0.576 6.958 0.791 3.380 24.718 -0.824 1.705 6.953 7.847 -1.836 24.957 5 AA_DC1005DG1006:DC1001DG1002_AA A 1005 ? A 1002 ? A 1006 ? A 1001 ?
#
_pdbx_initial_refinement_model.accession_code 465D
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.details 'NDB entry DD0015'
#
_atom_sites.entry_id 1KCI
_atom_sites.fract_transf_matrix[1][1] 0.033070
_atom_sites.fract_transf_matrix[1][2] 0.019093
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.038186
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.025419
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
O
P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
_atom_site.pdbx_label_index
ATOM 1 O "O5'" . DC A 1 1 ? 20.407 10.856 27.154 1.00 32.08 ? 1001 DC A "O5'" 1 1
ATOM 2 C "C5'" . DC A 1 1 ? 19.427 11.748 27.558 1.00 23.00 ? 1001 DC A "C5'" 1 1
ATOM 3 C "C4'" . DC A 1 1 ? 18.668 12.028 26.266 1.00 20.98 ? 1001 DC A "C4'" 1 1
ATOM 4 O "O4'" . DC A 1 1 ? 19.456 12.238 25.042 1.00 22.98 ? 1001 DC A "O4'" 1 1
ATOM 5 C "C3'" . DC A 1 1 ? 17.695 10.867 25.872 1.00 23.71 ? 1001 DC A "C3'" 1 1
ATOM 6 O "O3'" . DC A 1 1 ? 16.522 11.047 26.547 1.00 23.45 ? 1001 DC A "O3'" 1 1
ATOM 7 C "C2'" . DC A 1 1 ? 17.371 10.855 24.358 1.00 23.10 ? 1001 DC A "C2'" 1 1
ATOM 8 C "C1'" . DC A 1 1 ? 18.770 11.569 23.892 1.00 22.97 ? 1001 DC A "C1'" 1 1
ATOM 9 N N1 . DC A 1 1 ? 19.861 10.797 23.249 1.00 23.63 ? 1001 DC A N1 1 1
ATOM 10 C C2 . DC A 1 1 ? 19.988 10.846 21.865 1.00 23.65 ? 1001 DC A C2 1 1
ATOM 11 O O2 . DC A 1 1 ? 19.179 11.539 21.218 1.00 22.44 ? 1001 DC A O2 1 1
ATOM 12 N N3 . DC A 1 1 ? 20.993 10.141 21.297 1.00 18.72 ? 1001 DC A N3 1 1
ATOM 13 C C4 . DC A 1 1 ? 21.836 9.412 22.043 1.00 20.85 ? 1001 DC A C4 1 1
ATOM 14 N N4 . DC A 1 1 ? 22.801 8.736 21.434 1.00 26.20 ? 1001 DC A N4 1 1
ATOM 15 C C5 . DC A 1 1 ? 21.718 9.351 23.462 1.00 26.69 ? 1001 DC A C5 1 1
ATOM 16 C C6 . DC A 1 1 ? 20.721 10.057 24.015 1.00 26.48 ? 1001 DC A C6 1 1
ATOM 17 P P . DG A 1 2 ? 15.495 9.692 26.808 1.00 33.14 ? 1002 DG A P 1 2
ATOM 18 O OP1 . DG A 1 2 ? 14.482 10.176 27.806 1.00 25.30 ? 1002 DG A OP1 1 2
ATOM 19 O OP2 . DG A 1 2 ? 16.413 8.596 27.261 1.00 36.44 ? 1002 DG A OP2 1 2
ATOM 20 O "O5'" . DG A 1 2 ? 14.868 9.443 25.282 1.00 26.42 ? 1002 DG A "O5'" 1 2
ATOM 21 C "C5'" . DG A 1 2 ? 13.985 8.377 25.320 1.00 27.35 ? 1002 DG A "C5'" 1 2
ATOM 22 C "C4'" . DG A 1 2 ? 13.489 8.410 23.873 1.00 31.23 ? 1002 DG A "C4'" 1 2
ATOM 23 O "O4'" . DG A 1 2 ? 14.382 7.960 22.803 1.00 38.09 ? 1002 DG A "O4'" 1 2
ATOM 24 C "C3'" . DG A 1 2 ? 12.228 7.500 23.677 1.00 31.21 ? 1002 DG A "C3'" 1 2
ATOM 25 O "O3'" . DG A 1 2 ? 11.415 8.120 22.785 1.00 28.09 ? 1002 DG A "O3'" 1 2
ATOM 26 C "C2'" . DG A 1 2 ? 12.631 6.101 23.142 1.00 36.31 ? 1002 DG A "C2'" 1 2
ATOM 27 C "C1'" . DG A 1 2 ? 13.980 6.607 22.348 1.00 35.27 ? 1002 DG A "C1'" 1 2
ATOM 28 N N9 . DG A 1 2 ? 15.230 5.826 22.398 1.00 24.64 ? 1002 DG A N9 1 2
ATOM 29 C C8 . DG A 1 2 ? 15.912 5.441 23.530 1.00 31.19 ? 1002 DG A C8 1 2
ATOM 30 N N7 . DG A 1 2 ? 16.994 4.754 23.282 1.00 32.58 ? 1002 DG A N7 1 2
ATOM 31 C C5 . DG A 1 2 ? 17.029 4.678 21.891 1.00 30.50 ? 1002 DG A C5 1 2
ATOM 32 C C6 . DG A 1 2 ? 17.970 4.057 21.040 1.00 27.91 ? 1002 DG A C6 1 2
ATOM 33 O O6 . DG A 1 2 ? 18.996 3.424 21.317 1.00 23.02 ? 1002 DG A O6 1 2
ATOM 34 N N1 . DG A 1 2 ? 17.636 4.214 19.696 1.00 22.36 ? 1002 DG A N1 1 2
ATOM 35 C C2 . DG A 1 2 ? 16.538 4.884 19.235 1.00 26.71 ? 1002 DG A C2 1 2
ATOM 36 N N2 . DG A 1 2 ? 16.426 4.902 17.899 1.00 23.67 ? 1002 DG A N2 1 2
ATOM 37 N N3 . DG A 1 2 ? 15.650 5.471 20.020 1.00 27.76 ? 1002 DG A N3 1 2
ATOM 38 C C4 . DG A 1 2 ? 15.948 5.334 21.334 1.00 27.03 ? 1002 DG A C4 1 2
ATOM 39 P P . DT A 1 3 ? 9.896 7.447 22.321 1.00 34.32 ? 1003 DT A P 1 3
ATOM 40 O OP1 . DT A 1 3 ? 9.092 8.615 21.873 1.00 32.79 ? 1003 DT A OP1 1 3
ATOM 41 O OP2 . DT A 1 3 ? 9.437 6.699 23.536 1.00 44.21 ? 1003 DT A OP2 1 3
ATOM 42 O "O5'" . DT A 1 3 ? 10.351 6.403 21.105 1.00 30.40 ? 1003 DT A "O5'" 1 3
ATOM 43 C "C5'" . DT A 1 3 ? 10.741 7.205 20.040 1.00 28.10 ? 1003 DT A "C5'" 1 3
ATOM 44 C "C4'" . DT A 1 3 ? 10.771 6.139 18.950 1.00 33.53 ? 1003 DT A "C4'" 1 3
ATOM 45 O "O4'" . DT A 1 3 ? 11.950 5.261 18.912 1.00 36.51 ? 1003 DT A "O4'" 1 3
ATOM 46 C "C3'" . DT A 1 3 ? 9.592 5.126 19.038 1.00 32.09 ? 1003 DT A "C3'" 1 3
ATOM 47 O "O3'" . DT A 1 3 ? 9.292 4.667 17.806 1.00 43.71 ? 1003 DT A "O3'" 1 3
ATOM 48 C "C2'" . DT A 1 3 ? 10.004 3.900 19.904 1.00 29.10 ? 1003 DT A "C2'" 1 3
ATOM 49 C "C1'" . DT A 1 3 ? 11.517 3.880 19.219 1.00 33.07 ? 1003 DT A "C1'" 1 3
ATOM 50 N N1 . DT A 1 3 ? 12.635 3.226 19.926 1.00 31.04 ? 1003 DT A N1 1 3
ATOM 51 C C2 . DT A 1 3 ? 13.673 2.718 19.169 1.00 24.13 ? 1003 DT A C2 1 3
ATOM 52 O O2 . DT A 1 3 ? 13.715 2.782 17.952 1.00 38.07 ? 1003 DT A O2 1 3
ATOM 53 N N3 . DT A 1 3 ? 14.673 2.125 19.897 1.00 21.35 ? 1003 DT A N3 1 3
ATOM 54 C C4 . DT A 1 3 ? 14.727 1.996 21.266 1.00 21.36 ? 1003 DT A C4 1 3
ATOM 55 O O4 . DT A 1 3 ? 15.683 1.442 21.791 1.00 29.18 ? 1003 DT A O4 1 3
ATOM 56 C C5 . DT A 1 3 ? 13.608 2.549 21.998 1.00 36.86 ? 1003 DT A C5 1 3
ATOM 57 C C7 . DT A 1 3 ? 13.612 2.441 23.492 1.00 44.34 ? 1003 DT A C7 1 3
ATOM 58 C C6 . DT A 1 3 ? 12.622 3.133 21.300 1.00 38.63 ? 1003 DT A C6 1 3
ATOM 59 P P . DA A 1 4 ? 7.782 4.434 17.022 1.00 48.00 ? 1004 DA A P 1 4
ATOM 60 O OP1 . DA A 1 4 ? 7.194 5.797 16.873 1.00 40.79 ? 1004 DA A OP1 1 4
ATOM 61 O OP2 . DA A 1 4 ? 7.048 3.462 17.905 1.00 37.69 ? 1004 DA A OP2 1 4
ATOM 62 O "O5'" . DA A 1 4 ? 8.228 3.740 15.567 1.00 40.49 ? 1004 DA A "O5'" 1 4
ATOM 63 C "C5'" . DA A 1 4 ? 9.078 4.506 14.784 1.00 29.44 ? 1004 DA A "C5'" 1 4
ATOM 64 C "C4'" . DA A 1 4 ? 9.827 3.392 14.042 1.00 20.33 ? 1004 DA A "C4'" 1 4
ATOM 65 O "O4'" . DA A 1 4 ? 10.793 2.608 14.818 1.00 26.01 ? 1004 DA A "O4'" 1 4
ATOM 66 C "C3'" . DA A 1 4 ? 8.864 2.320 13.441 1.00 18.06 ? 1004 DA A "C3'" 1 4
ATOM 67 O "O3'" . DA A 1 4 ? 9.332 1.934 12.222 1.00 22.55 ? 1004 DA A "O3'" 1 4
ATOM 68 C "C2'" . DA A 1 4 ? 8.783 1.064 14.353 1.00 20.00 ? 1004 DA A "C2'" 1 4
ATOM 69 C "C1'" . DA A 1 4 ? 10.298 1.231 14.960 1.00 31.75 ? 1004 DA A "C1'" 1 4
ATOM 70 N N9 . DA A 1 4 ? 10.534 0.885 16.368 1.00 24.93 ? 1004 DA A N9 1 4
ATOM 71 C C8 . DA A 1 4 ? 9.684 1.130 17.418 1.00 26.47 ? 1004 DA A C8 1 4
ATOM 72 N N7 . DA A 1 4 ? 10.154 0.709 18.573 1.00 28.21 ? 1004 DA A N7 1 4
ATOM 73 C C5 . DA A 1 4 ? 11.388 0.156 18.254 1.00 28.34 ? 1004 DA A C5 1 4
ATOM 74 C C6 . DA A 1 4 ? 12.379 -0.459 19.039 1.00 24.81 ? 1004 DA A C6 1 4
ATOM 75 N N6 . DA A 1 4 ? 12.262 -0.619 20.362 1.00 21.74 ? 1004 DA A N6 1 4
ATOM 76 N N1 . DA A 1 4 ? 13.497 -0.908 18.425 1.00 21.60 ? 1004 DA A N1 1 4
ATOM 77 C C2 . DA A 1 4 ? 13.594 -0.738 17.100 1.00 20.15 ? 1004 DA A C2 1 4
ATOM 78 N N3 . DA A 1 4 ? 12.727 -0.172 16.252 1.00 29.19 ? 1004 DA A N3 1 4
ATOM 79 C C4 . DA A 1 4 ? 11.630 0.259 16.895 1.00 25.58 ? 1004 DA A C4 1 4
ATOM 80 P P . DC A 1 5 ? 8.575 0.698 11.261 1.00 26.84 ? 1005 DC A P 1 5
ATOM 81 O OP1 . DC A 1 5 ? 8.941 1.066 9.859 1.00 21.22 ? 1005 DC A OP1 1 5
ATOM 82 O OP2 . DC A 1 5 ? 7.131 0.805 11.671 1.00 25.12 ? 1005 DC A OP2 1 5
ATOM 83 O "O5'" . DC A 1 5 ? 9.301 -0.688 11.816 1.00 20.69 ? 1005 DC A "O5'" 1 5
ATOM 84 C "C5'" . DC A 1 5 ? 10.585 -0.817 11.286 1.00 22.82 ? 1005 DC A "C5'" 1 5
ATOM 85 C "C4'" . DC A 1 5 ? 11.067 -2.078 12.009 1.00 16.25 ? 1005 DC A "C4'" 1 5
ATOM 86 O "O4'" . DC A 1 5 ? 11.160 -2.019 13.476 1.00 19.10 ? 1005 DC A "O4'" 1 5
ATOM 87 C "C3'" . DC A 1 5 ? 10.143 -3.303 11.731 1.00 21.22 ? 1005 DC A "C3'" 1 5
ATOM 88 O "O3'" . DC A 1 5 ? 10.879 -4.417 11.440 1.00 26.60 ? 1005 DC A "O3'" 1 5
ATOM 89 C "C2'" . DC A 1 5 ? 9.283 -3.655 12.982 1.00 24.49 ? 1005 DC A "C2'" 1 5
ATOM 90 C "C1'" . DC A 1 5 ? 10.489 -3.208 14.030 1.00 18.75 ? 1005 DC A "C1'" 1 5
ATOM 91 N N1 . DC A 1 5 ? 10.146 -2.977 15.449 1.00 22.99 ? 1005 DC A N1 1 5
ATOM 92 C C2 . DC A 1 5 ? 11.046 -3.376 16.432 1.00 23.73 ? 1005 DC A C2 1 5
ATOM 93 O O2 . DC A 1 5 ? 12.127 -3.920 16.136 1.00 23.70 ? 1005 DC A O2 1 5
ATOM 94 N N3 . DC A 1 5 ? 10.724 -3.164 17.730 1.00 22.55 ? 1005 DC A N3 1 5
ATOM 95 C C4 . DC A 1 5 ? 9.569 -2.586 18.060 1.00 26.29 ? 1005 DC A C4 1 5
ATOM 96 N N4 . DC A 1 5 ? 9.355 -2.423 19.372 1.00 28.50 ? 1005 DC A N4 1 5
ATOM 97 C C5 . DC A 1 5 ? 8.629 -2.166 17.076 1.00 21.85 ? 1005 DC A C5 1 5
ATOM 98 C C6 . DC A 1 5 ? 8.955 -2.380 15.783 1.00 22.21 ? 1005 DC A C6 1 5
ATOM 99 P P . DG A 1 6 ? 10.248 -5.571 10.305 1.00 28.64 ? 1006 DG A P 1 6
ATOM 100 O OP1 . DG A 1 6 ? 10.789 -5.149 8.967 1.00 26.81 ? 1006 DG A OP1 1 6
ATOM 101 O OP2 . DG A 1 6 ? 8.770 -5.513 10.490 1.00 25.38 ? 1006 DG A OP2 1 6
ATOM 102 O "O5'" . DG A 1 6 ? 10.960 -6.991 10.786 1.00 30.17 ? 1006 DG A "O5'" 1 6
ATOM 103 C "C5'" . DG A 1 6 ? 10.399 -7.288 11.997 1.00 20.59 ? 1006 DG A "C5'" 1 6
ATOM 104 C "C4'" . DG A 1 6 ? 10.777 -8.758 12.115 1.00 30.33 ? 1006 DG A "C4'" 1 6
ATOM 105 O "O4'" . DG A 1 6 ? 10.586 -9.369 13.442 1.00 25.32 ? 1006 DG A "O4'" 1 6
ATOM 106 C "C3'" . DG A 1 6 ? 9.969 -9.688 11.162 1.00 25.78 ? 1006 DG A "C3'" 1 6
ATOM 107 O "O3'" . DG A 1 6 ? 10.718 -10.772 10.815 1.00 36.51 ? 1006 DG A "O3'" 1 6
ATOM 108 C "C2'" . DG A 1 6 ? 8.700 -10.220 11.873 1.00 28.35 ? 1006 DG A "C2'" 1 6
ATOM 109 C "C1'" . DG A 1 6 ? 9.392 -10.213 13.368 1.00 30.84 ? 1006 DG A "C1'" 1 6
ATOM 110 N N9 . DG A 1 6 ? 8.540 -9.801 14.494 1.00 32.10 ? 1006 DG A N9 1 6
ATOM 111 C C8 . DG A 1 6 ? 7.313 -9.198 14.411 1.00 17.88 ? 1006 DG A C8 1 6
ATOM 112 N N7 . DG A 1 6 ? 6.800 -8.951 15.575 1.00 26.14 ? 1006 DG A N7 1 6
ATOM 113 C C5 . DG A 1 6 ? 7.730 -9.413 16.488 1.00 19.23 ? 1006 DG A C5 1 6
ATOM 114 C C6 . DG A 1 6 ? 7.718 -9.415 17.905 1.00 16.57 ? 1006 DG A C6 1 6
ATOM 115 O O6 . DG A 1 6 ? 6.833 -8.984 18.664 1.00 21.54 ? 1006 DG A O6 1 6
ATOM 116 N N1 . DG A 1 6 ? 8.887 -9.991 18.407 1.00 24.75 ? 1006 DG A N1 1 6
ATOM 117 C C2 . DG A 1 6 ? 9.918 -10.495 17.655 1.00 23.41 ? 1006 DG A C2 1 6
ATOM 118 N N2 . DG A 1 6 ? 10.984 -11.021 18.277 1.00 20.27 ? 1006 DG A N2 1 6
ATOM 119 N N3 . DG A 1 6 ? 9.927 -10.491 16.334 1.00 21.12 ? 1006 DG A N3 1 6
ATOM 120 C C4 . DG A 1 6 ? 8.818 -9.944 15.827 1.00 25.11 ? 1006 DG A C4 1 6
HETATM 121 O O24 . DRC B 2 . ? 17.000 1.762 25.250 0.66 44.94 ? 3014 DRC A O24 1 3014
HETATM 122 C C20 . DRC B 2 . ? 18.650 3.574 25.590 0.66 47.13 ? 3014 DRC A C20 1 3014
HETATM 123 C C21 . DRC B 2 . ? 17.900 2.373 26.215 0.66 46.18 ? 3014 DRC A C21 1 3014
HETATM 124 C C22 . DRC B 2 . ? 19.044 1.762 23.858 0.66 47.47 ? 3014 DRC A C22 1 3014
HETATM 125 C C23 . DRC B 2 . ? 17.498 1.651 23.886 0.66 45.00 ? 3014 DRC A C23 1 3014
HETATM 126 N N19 . DRC B 2 . ? 19.457 3.117 24.393 0.66 49.55 ? 3014 DRC A N19 1 3014
HETATM 127 C C18 . DRC B 2 . ? 20.948 3.360 24.476 0.66 40.66 ? 3014 DRC A C18 1 3014
HETATM 128 C C17 . DRC B 2 . ? 21.387 4.853 24.277 1.00 30.44 ? 3014 DRC A C17 1 3014
HETATM 129 N N16 . DRC B 2 . ? 20.364 5.645 23.525 1.00 33.47 ? 3014 DRC A N16 1 3014
HETATM 130 C C15 . DRC B 2 . ? 20.585 6.105 22.275 1.00 32.45 ? 3014 DRC A C15 1 3014
HETATM 131 O O15 . DRC B 2 . ? 21.630 5.733 21.743 1.00 33.85 ? 3014 DRC A O15 1 3014
HETATM 132 N N9 . DRC B 2 . ? 17.537 8.257 17.256 1.00 33.20 ? 3014 DRC A N9 1 3014
HETATM 133 C C4 . DRC B 2 . ? 19.593 6.975 21.511 1.00 27.95 ? 3014 DRC A C4 1 3014
HETATM 134 C C3 . DRC B 2 . ? 18.538 7.569 22.214 1.00 21.33 ? 3014 DRC A C3 1 3014
HETATM 135 C C2 . DRC B 2 . ? 17.517 8.217 21.542 1.00 30.54 ? 3014 DRC A C2 1 3014
HETATM 136 C C1 . DRC B 2 . ? 17.497 8.284 20.163 1.00 32.00 ? 3014 DRC A C1 1 3014
HETATM 137 C C11 . DRC B 2 . ? 18.500 7.653 19.389 1.00 31.23 ? 3014 DRC A C11 1 3014
HETATM 138 C C12 . DRC B 2 . ? 19.582 6.988 20.082 1.00 30.73 ? 3014 DRC A C12 1 3014
HETATM 139 C C9 . DRC B 2 . ? 18.522 7.661 17.964 1.00 27.77 ? 3014 DRC A C9 1 3014
HETATM 140 C C13 . DRC B 2 . ? 19.625 7.074 17.295 1.00 26.98 ? 3014 DRC A C13 1 3014
HETATM 141 C C14 . DRC B 2 . ? 20.652 6.452 18.099 1.00 24.72 ? 3014 DRC A C14 1 3014
HETATM 142 N N10 . DRC B 2 . ? 20.552 6.395 19.409 1.00 21.56 ? 3014 DRC A N10 1 3014
HETATM 143 C C8 . DRC B 2 . ? 19.774 7.055 15.886 1.00 27.72 ? 3014 DRC A C8 1 3014
HETATM 144 C C7 . DRC B 2 . ? 20.906 6.495 15.296 1.00 27.95 ? 3014 DRC A C7 1 3014
HETATM 145 C C6 . DRC B 2 . ? 21.878 5.898 16.092 1.00 25.70 ? 3014 DRC A C6 1 3014
HETATM 146 C C5 . DRC B 2 . ? 21.722 5.826 17.469 1.00 20.68 ? 3014 DRC A C5 1 3014
HETATM 147 O O24 . DRC C 2 . ? 5.312 -6.311 17.382 0.50 37.58 ? 3015 DRC A O24 1 3015
HETATM 148 C C20 . DRC C 2 . ? 3.587 -8.058 17.734 0.50 26.47 ? 3015 DRC A C20 1 3015
HETATM 149 C C21 . DRC C 2 . ? 4.624 -7.113 18.383 0.50 34.38 ? 3015 DRC A C21 1 3015
HETATM 150 C C22 . DRC C 2 . ? 4.275 -7.346 15.396 0.50 32.68 ? 3015 DRC A C22 1 3015
HETATM 151 C C23 . DRC C 2 . ? 4.563 -6.039 16.164 0.50 28.06 ? 3015 DRC A C23 1 3015
HETATM 152 N N19 . DRC C 2 . ? 4.029 -8.496 16.351 0.50 29.52 ? 3015 DRC A N19 1 3015
HETATM 153 C C18 . DRC C 2 . ? 3.177 -9.596 15.751 0.50 33.63 ? 3015 DRC A C18 1 3015
HETATM 154 C C17 . DRC C 2 . ? 3.073 -10.915 16.594 0.50 33.25 ? 3015 DRC A C17 1 3015
HETATM 155 N N16 . DRC C 2 . ? 4.353 -11.681 16.488 0.50 36.61 ? 3015 DRC A N16 1 3015
HETATM 156 C C15 . DRC C 2 . ? 5.111 -11.950 17.564 0.50 31.47 ? 3015 DRC A C15 1 3015
HETATM 157 O O15 . DRC C 2 . ? 4.598 -11.625 18.629 0.50 22.41 ? 3015 DRC A O15 1 3015
HETATM 158 N N9 . DRC C 2 . ? 10.349 -14.561 19.816 0.50 23.72 ? 3015 DRC A N9 1 3015
HETATM 159 C C4 . DRC C 2 . ? 6.470 -12.651 17.516 0.50 30.17 ? 3015 DRC A C4 1 3015
HETATM 160 C C3 . DRC C 2 . ? 7.023 -12.976 16.273 0.50 29.21 ? 3015 DRC A C3 1 3015
HETATM 161 C C2 . DRC C 2 . ? 8.252 -13.606 16.180 0.50 21.72 ? 3015 DRC A C2 1 3015
HETATM 162 C C1 . DRC C 2 . ? 8.960 -13.935 17.319 0.50 16.79 ? 3015 DRC A C1 1 3015
HETATM 163 C C11 . DRC C 2 . ? 8.456 -13.658 18.609 0.50 22.75 ? 3015 DRC A C11 1 3015
HETATM 164 C C12 . DRC C 2 . ? 7.174 -12.993 18.705 0.50 25.58 ? 3015 DRC A C12 1 3015
HETATM 165 C C9 . DRC C 2 . ? 9.133 -13.968 19.826 0.50 11.51 ? 3015 DRC A C9 1 3015
HETATM 166 C C13 . DRC C 2 . ? 8.532 -13.579 21.054 0.50 17.71 ? 3015 DRC A C13 1 3015
HETATM 167 C C14 . DRC C 2 . ? 7.226 -12.970 21.017 0.50 20.36 ? 3015 DRC A C14 1 3015
HETATM 168 N N10 . DRC C 2 . ? 6.638 -12.706 19.882 0.50 23.48 ? 3015 DRC A N10 1 3015
HETATM 169 C C8 . DRC C 2 . ? 9.064 -13.886 22.329 0.50 20.67 ? 3015 DRC A C8 1 3015
HETATM 170 C C7 . DRC C 2 . ? 8.429 -13.465 23.488 0.50 24.06 ? 3015 DRC A C7 1 3015
HETATM 171 C C6 . DRC C 2 . ? 7.178 -12.861 23.426 0.50 31.80 ? 3015 DRC A C6 1 3015
HETATM 172 C C5 . DRC C 2 . ? 6.606 -12.560 22.195 0.50 25.04 ? 3015 DRC A C5 1 3015
HETATM 173 O O . HOH D 3 . ? 13.024 -5.947 7.801 1.00 27.88 ? 4001 HOH A O 1 4001
HETATM 174 O O . HOH D 3 . ? 11.752 9.888 28.130 1.00 27.02 ? 4002 HOH A O 1 4002
HETATM 175 O O . HOH D 3 . ? 15.043 6.598 28.591 1.00 43.22 ? 4003 HOH A O 1 4003
HETATM 176 O O . HOH D 3 . ? 17.366 8.714 29.723 1.00 33.96 ? 4004 HOH A O 1 4004
HETATM 177 O O . HOH D 3 . ? 18.201 7.221 25.692 1.00 32.03 ? 4005 HOH A O 1 4005
HETATM 178 O O . HOH D 3 . ? 12.079 -12.839 12.657 1.00 35.81 ? 4006 HOH A O 1 4006
HETATM 179 O O . HOH D 3 . ? 10.108 -14.294 13.288 1.00 23.23 ? 4007 HOH A O 1 4007
HETATM 180 O O . HOH D 3 . ? 22.986 11.631 26.844 1.00 19.51 ? 4008 HOH A O 1 4008
HETATM 181 O O . HOH D 3 . ? 7.560 -13.094 12.573 0.50 26.49 ? 4009 HOH A O 1 4009
HETATM 182 O O . HOH D 3 . ? 13.758 5.170 26.472 1.00 38.53 ? 4010 HOH A O 1 4010
HETATM 183 O O . HOH D 3 . ? 11.972 -15.147 21.623 1.00 28.29 ? 4011 HOH A O 1 4011
HETATM 184 O O . HOH D 3 . ? 9.881 10.722 21.429 1.00 40.60 ? 4012 HOH A O 1 4012
HETATM 185 O O . HOH D 3 . ? 12.770 4.310 16.022 1.00 29.94 ? 4013 HOH A O 1 4013
HETATM 186 O O . HOH D 3 . ? 8.495 -0.898 8.147 1.00 30.13 ? 4014 HOH A O 1 4014
HETATM 187 O O . HOH D 3 . ? 7.324 -3.402 9.012 1.00 43.65 ? 4015 HOH A O 1 4015
HETATM 188 O O . HOH D 3 . ? 7.791 2.729 8.603 1.00 40.97 ? 4016 HOH A O 1 4016
HETATM 189 O O . HOH D 3 . ? 13.604 -14.556 12.895 1.00 47.34 ? 4017 HOH A O 1 4017
HETATM 190 O O . HOH D 3 . ? 6.585 -1.324 19.981 1.00 31.77 ? 4018 HOH A O 1 4018
HETATM 191 O O . HOH D 3 . ? 15.119 0.000 26.890 0.33 52.97 ? 4019 HOH A O 1 4019
HETATM 192 O O . HOH D 3 . ? 7.560 -13.094 10.113 0.50 57.15 ? 4020 HOH A O 1 4020
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