IIMS (18th June 2001)

PROPOSED 3D-EM MAP HEADER/DATA FILE


Based on CBF/imgCIF see

  • CBF/imgCIF
  • DRAFT CBF DEFINITION
    For software see
  • CBFlib
    For Other cif software see
  • CCP4 Coordinate Library Project


    data_map_1

    _iims_map.id
    _iims_map.3d_reconstruction_id
    _iims_map.imaging_id
    _iims_map.date
    _iims_map.array_id ARRAY1
    _iims_map.binary_id

    _iims_map.num_columns
    _iims_map.num_rows
    _iims_map.num_sections

    _iims_map.mode

    _iims_map.num_first_column
    _iims_map.num_first_row
    _iims_map.num_first_section

    _iims_map.num_intervals_x
    _iims_map.num_intervals_y
    _iims_map.num_intervals_z

    _iims_map.cell_length_a
    _iims_map.cell_length_b
    _iims_map.cell_length_c
    _iims_map.cell_length_a_esd
    _iims_map.cell_length_b_esd
    _iims_map.cell_length_c_esd
    _iims_map.cell_angle_alpha
    _iims_map.cell_angle_beta
    _iims_map.cell_angle_gamma
    _iims_map.volume

    _iims_map.column_axis
    _iims_map.row_axis
    _iims_map.section_axis

    _iims_map.min_density
    _iims_map.max_density
    _iims_map.mean_density
    _iims_map.rms_from_mean_density

    _iims_map.space_group_name_H-M
    _iims_map.symmetry_Int_Tables_number
    _iims_map.symmetry_cell_setting

    _iims_map.skew_flag

    _iims_map.details

    _iims_map_skew.map_id
    _iims_map_skew.matrix[1][1]
    _iims_map_skew.matrix[1][2]
    _iims_map_skew.matrix[1][3]
    _iims_map_skew.matrix[2][1]
    _iims_map_skew.matrix[2][2]
    _iims_map_skew.matrix[2][3]
    _iims_map_skew.matrix[3][1]
    _iims_map_skew.matrix[3][2]
    _iims_map_skew.matrix[3][3]
    _iims_map_skew.vector[1]
    _iims_map_skew.vector[2]
    _iims_map_skew.vector[3]

    _iims_map.diff_density_max
    _iims_map.diff_density_max_esd
    _iims_map.diff_density_min
    _iims_map.diff_density_min_esd
    _iims_map.diff_density_rms
    _iims_map.diff_density_rms_esd

    loop_
    _iims_map_symmetry.map_id
    _iims_map_symmetry.equiv.id
    _iims_map_symmetry.equiv_pos_as_xyz
    1 '+x,+y,+z'
    2 '-x,-y,z'
    3 '1/2+x,1/2-y,-z'
    4 '1/2-x,1/2+y,-z'

    _array_structure_list.array_id
    _array_structure_list.index
    _array_structure_list.dimension
    _array_structure_list.precedence
    _array_structure_list.direction
    _array_structure_list.axis_set_id

    loop_
    _array_element_size.array_id ARRAY1
    _array_element_size.index 1
    _array_element_size.size 150e-6

    _array_intensities.array_id ARRAY1
    _array_intensities.binary_id 1
    _array_intensities.linearity linear
    _array_intensities.gain 1.15
    _array_intensities.gain_esd 0.2

    _array_structure.id ARRAY1
    _array_structure.encoding_type "signed 32-bit integer"
    _array_structure.compression_type packed
    _array_structure.byte_order little_endian

    _array_data.array_id ARRAY1
    _array_data.binary_id 1
    _array_data.data
    ;
    --CIF-BINARY-FORMAT-SECTION--
    Content-Type: application/octet-stream;
    conversions="x-CBF_PACKED"
    Content-Transfer-Encoding: BASE64
    X-Binary-Size: 3801324
    X-Binary-ID: 1
    X-Binary-Element-Type: "signed 32-bit integer"
    Content-MD5: 07lZFvF+aOcW85IN7usl8A==

    AABRAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAZBQSr1sKNBOeOe9HITdMdDUnbq7bg
    ...
    8REo6TtBrxJ1vKqAvx9YDMD6J18Qg83OMr/tgssjMIJMXATDsZobL90AEXc4KigE

    --CIF-BINARY-FORMAT-SECTION----
    ;




    The project is funded by the European Commission as the IIMS,
    contract-no. QLRI-CT-2000-31237 under the RTD programme
    "Quality of Life and Management of Living Resources"