IIMS (18th June 2001)

PROPOSED IMAGE HEADER/DATA FILE

Based on CBF/imgCIF see

  • CBF/imgCIF
  • DRAFT CBF DEFINITION
    For software see
  • CBFlib
    For Other cif software see
  • CCP4 Coordinate Library Project


    data_image_1
    _iims_imaging.id
    _iims_imaging.sample_support_id
    _iims_imaging.microscope_type
    _iims_imaging.microscope_manufacturer
    _iims_imaging.microscope_model
    _iims_imaging.specimen_holder_type
    _iims_imaging.specimen_holder_manufacturer
    _iims_imaging.specimen_holder_model
    _iims_imaging.details
    _iims_imaging.date
    _iims_imaging.accelerating_voltage
    _iims_imaging.illumination_mode
    _iims_imaging.mode
    _iims_imaging.nominal_Cs
    _iims_imaging.nominal_defocus
    _iims_imaging.tilt_angle
    _iims_imaging.nominal_magnification
    _iims_imaging.calibrated_magnification
    _iims_imaging.electron_source
    _iims_imaging.electron_dose
    _iims_imaging.energy_filter
    _iims_imaging.energy_window
    _iims_imaging.citation_id
    _iims_imaging.number_2d_crystals
    _iims_imaging.mean_2d_crystal_size
    _iims_imaging.temperature
    _iims_imaging.detector_distance
    _iims_imaging.recording_temp_range

    _iims_detector.id
    _iims_detector.details
    _iims_detector.type

    _iims_microscope_measurement.id
    _iims_microscope_measurement.details
    _iims_microscope_measurement.device_type
    _iims_microscope_measurement.device_details
    _iims_microscope_measurement.device_manufacturer

    _iims_image_scans.imaging_id
    _iims_image_scans.id
    _iims_image_scans.frame_id_start
    _iims_image_scans.frame_id_end
    _iims_image_scans.number_frames
    _iims_image_scans.details
    _iims_image_scans.scanner_name
    _iims_image_scans.scanner_model
    _iims_image_scans.sampling_size
    _iims_image_scans.od_range
    _iims_image_scans.quant_bit_size
    _iims_image_scans.citation_id

    _iims_imaging_data_frame.id
    _iims_imaging_data_frame.array_id ARRAY1
    _iims_imaging_data_frame.binary_id

    _array_structure_list.array_id
    _array_structure_list.index
    _array_structure_list.dimension
    _array_structure_list.precedence
    _array_structure_list.direction
    _array_structure_list.axis_set_id

    _array_element_size.array_id
    _array_element_size.index
    _array_element_size.size

    _array_intensities.array_id
    _array_intensities.binary_id
    _array_intensities.linearity
    _array_intensities.gain
    _array_intensities.gain_esd
    _array_intensities.overload
    _array_intensities.undefined_value

    _array_structure.id ARRAY1
    _array_structure.encoding_type "signed 32-bit integer"
    _array_structure.compression_type packed
    _array_structure.byte_order little_endian

    _array_data.array_id ARRAY1
    _array_data.binary_id 1
    _array_data.data
    ;
    --CIF-BINARY-FORMAT-SECTION--
    Content-Type: application/octet-stream;
    conversions="x-CBF_PACKED"
    Content-Transfer-Encoding: BASE64
    X-Binary-Size: 3801324
    X-Binary-ID: 1
    X-Binary-Element-Type: "signed 32-bit integer"
    Content-MD5: 07lZFvF+aOcW85IN7usl8A==

    AABRAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAZBQSr1sKNBOeOe9HITdMdDUnbq7bg
    ... data ...
    8REo6TtBrxJ1vKqAvx9YDMD6J18Qg83OMr/tgssjMIJMXATDsZobL90AEXc4KigE

    --CIF-BINARY-FORMAT-SECTION----
    ;




    The project is funded by the European Commission as the IIMS,
    contract-no. QLRI-CT-2000-31237 under the RTD programme
    "Quality of Life and Management of Living Resources"