12.10.2005
AFTERNOON SESSION |
12.30-14.00 |
Registration & Lunch |
|
| 14.00-14.20 |
Welcome and General Introduction |
Kim Henrick (PDF) |
| 14.20-15.00 |
The 3dem dictionary in mmcif terms |
Matt Baker (PDF) |
| 15.00-15.40 | RCSB software for handling the 3dem dictionary |
John Westbrook (PDF) |
| 15.40-16.00 |
Tea/Coffee break |
| 16.00-16:40 |
Integration of SPIDER with the Wadsworth Centre Project Archive covering data flow from EM acquisition to
completed reconstruction |
Bill Baxter (PDF) |
| 16.40-17.20 |
Integration of eMAN with the Baylor object-oriented database and electronic notebook for Electron Cryomicroscopy |
Steve Ludtke (PDF) |
| 17.20-18.00 |
IMAGIC and data harvesting |
Marin van Heel (PDF) |
| 18.00 |
Dinner & bar
|
13.10.2005
MORNING SESSION |
8.50-9.30 |
IPLT software and data harvesting in XML for Electron Microscopy |
Ansgar Philippsen (PDF) |
| 9.30-10.00 |
Flat file database for documenting image processing micrographs using Bsoft and STAR
format |
Bernard Heymann (PDF) |
| 10.00-10.30 |
IMAGIC header mapping betwen different formats
with em2em |
Michael Schatz (PDF) |
| 10.30-10.50 |
Coffee/Tea break |
| 10.50-11.30 |
Harvesting in tomography through the TOM suite of software using XML formats for image data in relation
to high-throughput electron microscopy |
Christof Best (PDF) |
| 11.30-11.50 |
COMET (tomography) software |
Lars-Goran Ofverstedt (PDF) |
| 11.50-12.20 |
MAP conventions and XML representation |
David Belnap (PDF) |
| 12.20-12:40 |
A hands-on example on software interoperability: model refinement interconnecting spiker and xmipp |
Carlos Perez Roca (PDF) |
| 12.40-13:00 |
Software interoperability: library level |
Carlos Oscar Sanchez Sorzano (PDF) |
13.00-14.00
| Lunch
|
AFTERNOON SESSION |
| 14.00-18.00 | The meeting will be held in an IT room with
the opportunity for developers to bring along the current version of their software and to have hands-on
sessions to begin the conversation of the software to using the new dictionary items as either mmCIF or
XML. We can either work on a single software library for all software developers to use in a software
jamboree or developers can work together to see how their packages can be converted and whether this
requires additions to the dictionary.
Files to be made available:
Current 3DEM database entries mapped to new dictionary
Mapping of Bsoft star format to new dictionary
Mapping of TOM XML to new dictionary
|
| 19.00 | Dinner & bar
|
14.10.2005
MORNING SESSION |
| 9.00-9.40 |
An Instrument Manufacture view of data harvesting through to archive database |
Reinier Perquin (PDF) |
| 9.40-10.00 | Visualisation trials via the WWW for 3dem maps using
the AstexViewer™ |
Tom Oldfield (PDF) |
| 10.00-10.40 |
Discussion on practicality of using the dictionary and next steps |
| 10.40-11.00 |
Coffee/Tea break
|
| 11.00-12.30 |
Programming session |
| 13.00 |
CLOSE & LUNCH |
