› 6kdh

X-ray diffraction
2.47Å resolution

Antibody 64M-5 Fab including isoAsp in ligand-free form

Released:
DOI: 10.2210/pdb6kdh/pdb
PDB entry 6kdh coloured by chain, front view.
PDB entry 6kdh coloured by chain, side view.
PDB entry 6kdh coloured by chain, top view.
Source organism: Mus musculus
Primary publication:
Structural and biochemical basis of the formation of isoaspartate in the complementarity-determining region of antibody 64M-5 Fab.
Yokoyama H, Mizutani R, Noguchi S, Hayashida N
Sci Rep 9 18494 (2019)
PMID: 31811216

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-214096 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain) Chain: L
Molecule details ›
Chain: L
Length: 218 amino acids
Theoretical weight: 24.1 KDa
Source organism: Mus musculus
Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain) Chain: H
Molecule details ›
Chain: H
Length: 221 amino acids
Theoretical weight: 23.83 KDa
Source organism: Mus musculus

Ligands and Environments

No bound ligands
1 modified residue:
Ligand IAS 1 x IAS

Experiments and Validation Details

Entry percentile scores
X-ray source: MACSCIENCE
Spacegroup: C222
Unit cell:
a: 101.789Å b: 150.485Å c: 65.151Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.194 0.194 0.253

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Citations

3 citation in other articles

An Unusually Rapid Protein Backbone Modification Stabilizes the Essential Bacterial Enzyme MurA.
Zhang et al. (2020)
2 more