5v3o

X-ray diffraction
3.2Å resolution

Cereblon in complex with DDB1 and CC-220

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-172480 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
DNA damage-binding protein 1 Chain: A
Molecule details ›
Chain: A
Length: 1140 amino acids
Theoretical weight: 127.1 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q16531 (Residues: 1-1140; Coverage: 100%)
Gene names: DDB1, XAP1
Sequence domains:
Structure domains:
Protein cereblon Chain: C
Molecule details ›
Chain: C
Length: 406 amino acids
Theoretical weight: 46.6 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q96SW2 (Residues: 40-442; Coverage: 91%)
Gene names: AD-006, CRBN
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-F
Spacegroup: P212121
Unit cell:
a: 111.029Å b: 126.886Å c: 172.487Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.207 0.204 0.267
Expression system: Spodoptera frugiperda