› 5l6g

X-ray diffraction
1.79Å resolution

Xylooligosaccharide oxidase from Myceliophthora thermophila C1 in complex with Xylose

Released:
DOI: 10.2210/pdb5l6g/pdb
PDB entry 5l6g coloured by chain, front view.
PDB entry 5l6g coloured by chain, side view.
PDB entry 5l6g coloured by chain, top view.
Source organism: Thermothelomyces thermophilus ATCC 42464
Primary publication:
Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
Ferrari AR, Rozeboom HJ, Dobruchowska JM, van Leeuwen SS, Vugts AS, Koetsier MJ, Visser J, Fraaije MW
J Biol Chem 291 23709-23718 (2016)
PMID: 27629413

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-124291 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Xylooligosaccharide oxidase Chain: A
Molecule details ›
Chain: A
Length: 497 amino acids
Theoretical weight: 54.38 KDa
Source organism: Thermothelomyces thermophilus ATCC 42464
Expression system: Thermothelomyces thermophilus ATCC 42464
UniProt:
  • Canonical: G2QG48 (Residues: 1-497; Coverage: 100%)
Gene names: MYCTH_102971, xylO
Sequence domains:
Structure domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
4 bound ligands:
Ligand FAD 1 x FAD
Ligand NAG 3 x NAG
Ligand XYP 3 x XYP
Ligand XYS 1 x XYS
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BRUKER AXS MICROSTAR-H
Spacegroup: C2
Unit cell:
a: 123.3Å b: 59.353Å c: 68.456Å
α: 90° β: 90.99° γ: 90°
R-values:
R R work R free
0.175 0.173 0.207
Expression system: Thermothelomyces thermophilus ATCC 42464

Quick links

Citations

3 review citations

Dampening the DAMPs: How Plants Maintain the Homeostasis of Cell Wall Molecular Patterns and Avoid Hyper-Immunity.
Pontiggia et al. (2020)
2 more

1 mention without citation

Discovery of a Xylooligosaccharide Oxidase from Myceliophthora thermophila C1.
Ferrari et al. (2016)