5imy

X-ray diffraction
2.4Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-109767 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Thiol-activated cytolysin C-terminal domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 490 amino acids
Theoretical weight: 54.21 KDa
Source organism: Gardnerella vaginalis
Expression system: Escherichia coli
UniProt:
  • Canonical: B2YGA4 (Residues: 29-516; Coverage: 100%)
Gene names: VLY, vly
Sequence domains:
CD59 glycoprotein Chains: C, D
Molecule details ›
Chains: C, D
Length: 78 amino acids
Theoretical weight: 9.1 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P13987 (Residues: 26-102; Coverage: 75%)
Gene names: CD59, MIC11, MIN1, MIN2, MIN3, MSK21
Sequence domains: u-PAR/Ly-6 domain
Structure domains: CD59

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Spacegroup: P21212
Unit cell:
a: 81.894Å b: 141.713Å c: 106.732Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.235 0.234 0.276
Expression system: Escherichia coli