› 5gl4

X-ray diffraction
2.2Å resolution

Crystal structure of TON_0340 in complex with Mn

Released:
DOI: 10.2210/pdb5gl4/pdb
PDB entry 5gl4 coloured by chain, front view.
PDB entry 5gl4 coloured by chain, side view.
PDB entry 5gl4 coloured by chain, top view.
Source organism: Thermococcus onnurineus NA1
Primary publication:
Identification of a Highly Conserved Hypothetical Protein TON_0340 as a Probable Manganese-Dependent Phosphatase.
Sohn YS, Lee SG, Lee KH, Ku B, Shin HC, Cha SS, Kim YG, Lee HS, Kang SG, Oh BH
PLoS One 11 e0167549 (2016)
PMID: 27907125

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-110410 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
D-glutamate cyclase-like C-terminal domain-containing protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 269 amino acids
Theoretical weight: 29.11 KDa
Source organism: Thermococcus onnurineus NA1
Expression system: Escherichia coli
UniProt:
  • Canonical: B6YTD8 (Residues: 1-268; Coverage: 100%)
Gene name: TON_0340
Sequence domains: D-glutamate cyclase-like, C-terminal
Structure domains: TON_0340

Ligands and Environments

1 bound ligand:
Ligand MN 17 x MN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NW12A
Spacegroup: P43212
Unit cell:
a: 107.041Å b: 107.041Å c: 360.961Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.217 0.217 0.259
Expression system: Escherichia coli

Quick links

Citations

1 mention without citation

Identification of a Highly Conserved Hypothetical Protein TON_0340 as a Probable Manganese-Dependent Phosphatase.
Sohn et al. (2016)