› 4xxl

X-ray diffraction
1.47Å resolution

Crystal structure of Class 1 cytochrome MtoD from Sideroxydans lithotrophicus ES-1

Released:
DOI: 10.2210/pdb4xxl/pdb
PDB entry 4xxl coloured by chain, front view.
PDB entry 4xxl coloured by chain, side view.
PDB entry 4xxl coloured by chain, top view.
Source organism: Sideroxydans lithotrophicus ES-1
Primary publication:
Characterization of MtoD from Sideroxydans lithotrophicus: a cytochrome c electron shuttle used in lithoautotrophic growth.
Beckwith CR, Edwards MJ, Lawes M, Shi L, Butt JN, Richardson DJ, Clarke TA
Front Microbiol 6 332 (2015)
PMID: 25972843

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112682 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytochrome c domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 125 amino acids
Theoretical weight: 13.76 KDa
Source organism: Sideroxydans lithotrophicus ES-1
Expression system: Shewanella oneidensis MR-1
UniProt:
  • Canonical: D5CN26 (Residues: 1-117; Coverage: 100%)
Gene name: Slit_2498
Sequence domains: Cytochrome c
Structure domains: Cytochrome c-like domain

Ligands and Environments

1 bound ligand:
Ligand HEC 1 x HEC
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P21212
Unit cell:
a: 92.18Å b: 40.2Å c: 29.7Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.192 0.19 0.23
Expression system: Shewanella oneidensis MR-1

Quick links

Citations

5 review citations

Extracellular electron transfer mechanisms between microorganisms and minerals.
Shi et al. (2016)
4 more

2 mentions without citation

Characterization of MtoD from Sideroxydans lithotrophicus: a cytochrome c electron shuttle used in lithoautotrophic growth.
Beckwith et al. (2015)
1 more