› 4qfu

X-ray diffraction
1.9Å resolution

Crystal structure of a glycoside hydrolase family 5 (BVU_2644) from Bacteroides vulgatus ATCC 8482 at 1.90 A resolution

Released:
DOI: 10.2210/pdb4qfu/pdb
PDB entry 4qfu coloured by chain, front view.
PDB entry 4qfu coloured by chain, side view.
PDB entry 4qfu coloured by chain, top view.
Source organism: Phocaeicola vulgatus ATCC 8482
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107887 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF4038 domain-containing protein Chains: A, B, C, D, E, F, G, H, I, J, K, L
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L
Length: 484 amino acids
Theoretical weight: 56.84 KDa
Source organism: Phocaeicola vulgatus ATCC 8482
Expression system: Escherichia coli
UniProt:
  • Canonical: A6L3N2 (Residues: 25-489; Coverage: 100%)
Gene name: BVU_2644
Sequence domains:
Structure domains: Glycosidases

Ligands and Environments

4 bound ligands:
Ligand MRD 24 x MRD
Ligand CL 12 x CL
Ligand NO3 3 x NO3
Ligand SAR 3 x SAR
1 modified residue:
Ligand MSE 180 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P1
Unit cell:
a: 115.95Å b: 117.589Å c: 125.249Å
α: 91.6° β: 92.82° γ: 98.92°
R-values:
R R work R free
0.144 0.142 0.172
Expression system: Escherichia coli

Quick links