4odm

X-ray diffraction
1.75Å resolution

Structure of SlyD from Thermus thermophilus in complex with S2-W23A peptide

Released:

Function and Biology Details

Reaction catalysed:
Peptidylproline (omega=180) = peptidylproline (omega=0)
Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assemblies composition:
hetero trimer (preferred)
monomeric
PDBe Complex ID:
PDB-CPX-141629 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Peptidyl-prolyl cis-trans isomerase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 153 amino acids
Theoretical weight: 16.77 KDa
Source organism: Thermus thermophilus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5SLE7 (Residues: 1-149; Coverage: 100%)
Gene name: TTHA0346
Sequence domains: FKBP-type peptidyl-prolyl cis-trans isomerase
Structure domains: Chitinase A; domain 3
Small ribosomal subunit protein uS2 Chains: E, F, G, H, I, J, K, L, M
Molecule details ›
Chains: E, F, G, H, I, J, K, L, M
Length: 16 amino acids
Theoretical weight: 1.74 KDa
Source organism: Escherichia coli K-12
Expression system: Not provided
UniProt:
  • Canonical: P0A7V0 (Residues: 20-34; Coverage: 6%)
Gene names: JW0164, b0169, rpsB

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: C2
Unit cell:
a: 184.12Å b: 41.2Å c: 131.52Å
α: 90° β: 123.13° γ: 90°
R-values:
R R work R free
0.178 0.176 0.208
Expression systems:
  • Escherichia coli
  • Not provided