4m6d Summary

pdbe.org/4m6d
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Crystal structure of the aptamer minF-lysozyme complex.

A publication describing this structure is not available. The depositing authors are Malashkevich, V.N.search; Padlan, F.C..search; Toro, R.search; Girvin, M.search; Almo, S.C.search; New York Structural Genomics Research Consortium (NYSGRC)search

This crystal structure was determined using X-ray diffraction at a resolution of 2.68 Å and deposited in 2013.

The experimental data on which the structure is based was also deposited.

This PDB entry contains a complex of 2 biomacromolecules, namely Lysozyme C and aptamer.

The molecule has more than one probable quaternary state observed. For more details see the quaternary structure page.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A Lysozyme C P00698 (19-147) (LYSC_CHICK)search Gallus gallussearch 93% 129 100%
C Lysozyme C P00698 (19-147) (LYSC_CHICK)search Gallus gallussearch 93% 129 100%
E Lysozyme C P00698 (19-147) (LYSC_CHICK)search Gallus gallussearch 93% 129 100%
G Lysozyme C P00698 (19-147) (LYSC_CHICK)search Gallus gallussearch 93% 129 100%
I Lysozyme C P00698 (19-147) (LYSC_CHICK)search Gallus gallussearch 93% 129 100%
K Lysozyme C P00698 (19-147) (LYSC_CHICK)search Gallus gallussearch 93% 129 100%


This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
P00698 (19 - 147) Lysozyme C Gallus gallus

Chain Sequence family (Pfam)
A, C, E, G, I, K (P00698) PF00062: C-type lysozyme/alpha-lactalbumin familysearch

Chain ID Biological process (GO) Molecular function (GO) Cellular component (GO)
A, C, E, G, I, K (P00698) cell wall macromolecule catabolic processsearch metabolic processsearch defense response to bacteriumsearch cytolysissearch retina homeostasissearch lysozyme activitysearch identical protein bindingsearch protein bindingsearch catalytic activitysearch hydrolase activitysearch hydrolase activity, acting on glycosyl bondssearch extracellular spacesearch extracellular vesicular exosomesearch extracellular regionsearch

Chain InterPro annotation
A, C, E, G, I, K Glycoside hydrolase, family 22, lysozymesearch Glycoside hydrolase, family 22search Glycoside hydrolase, family 22, conserved sitesearch Lysozyme-like domainsearch Lysozyme Csearch