4v7q

Electron Microscopy
3.8Å resolution

Atomic model of an infectious rotavirus particle

Released:
Related structures: EMD-5199

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 1860-mer (preferred)
PDBe Complex ID:
PDB-CPX-109487 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (5 distinct):
Inner capsid protein VP2 Chains: AA, AB
Molecule details ›
Chains: AA, AB
Length: 800 amino acids
Theoretical weight: 93.19 KDa
Source organism: Simian rotavirus A strain RRV
Expression system: Chlorocebus sabaeus
UniProt:
  • Canonical: B3F2X3 (Residues: 88-887; Coverage: 90%)
Sequence domains: Rotavirus VP2 protein
Intermediate capsid protein VP6 Chains: AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO
Molecule details ›
Chains: AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO
Length: 397 amino acids
Theoretical weight: 44.93 KDa
UniProt:
  • Canonical: B2BN53 (Residues: 1-397; Coverage: 100%)
Sequence domains: Rotavirus major capsid protein VP6
Outer capsid glycoprotein VP7 Chains: BA, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ
Molecule details ›
Chains: BA, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ
Length: 276 amino acids
Theoretical weight: 31.23 KDa
Source organism: Simian rotavirus A strain RRV
Expression system: Chlorocebus sabaeus
UniProt:
  • Canonical: P12476 (Residues: 51-326; Coverage: 100%)
Sequence domains: Glycoprotein VP7
Outer capsid protein VP4 Chains: BX, BY, BZ
Molecule details ›
Chains: BX, BY, BZ
Length: 776 amino acids
Theoretical weight: 86.66 KDa
Source organism: Simian rotavirus A strain RRV
Expression system: Chlorocebus sabaeus
UniProt:
  • Canonical: C3RX20 (Residues: 1-776; Coverage: 100%)
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.8Å
Relevant EMDB volumes: EMD-5199
Expression system: Chlorocebus sabaeus