› 4p09

X-ray diffraction
1.7Å resolution

Crystal structure of HOIP PUB domain

Released:
DOI: 10.2210/pdb4p09/pdb
PDB entry 4p09 coloured by chain, front view.
PDB entry 4p09 coloured by chain, side view.
PDB entry 4p09 coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Binding of OTULIN to the PUB domain of HOIP controls NF-κB signaling.
Schaeffer V, Akutsu M, Olma MH, Gomes LC, Kawasaki M, Dikic I
Mol Cell 54 349-61 (2014)
PMID: 24726327

Function and Biology Details

Reaction catalysed: 
(1a) [E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + [RBR-type E3 ubiquitin transferase]-L-cysteine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + [RBR-type E3 ubiquitin transferase]-S-ubiquitinyl-L-cysteine
Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-188461 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
E3 ubiquitin-protein ligase RNF31 Chain: A
Molecule details ›
Chain: A
Length: 184 amino acids
Theoretical weight: 20.77 KDa
Source organism: Homo sapiens
Expression system: Bacteria
UniProt:
  • Canonical: Q96EP0 (Residues: 1-179; Coverage: 17%)
Gene names: RNF31, ZIBRA
Sequence domains:
Structure domains: Methane Monooxygenase Hydroxylase; Chain G, domain 1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P41212
Unit cell:
a: 47.92Å b: 47.92Å c: 152.71Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.184 0.181 0.23
Expression system: Bacteria

Quick links

Citations

57 review citations

Ubiquitin modifications.
Swatek et al. (2016)
56 more