› 4i60

X-ray diffraction
2.5Å resolution

Crystal structure of avidin - biotinylruthenocene complex

Released:
DOI: 10.2210/pdb4i60/pdb
PDB entry 4i60 coloured by chain, front view.
PDB entry 4i60 coloured by chain, side view.
PDB entry 4i60 coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
Structural investigation of the interactions of biotinylruthenocene with avidin.
Strzelczyk P, Bujacz A, Plażuk D, Zakrzewski J, Bujacz G
Chem Biol Interact 204 6-12 (2013)
PMID: 23603015

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136083 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Avidin Chain: A
Molecule details ›
Chain: A
Length: 128 amino acids
Theoretical weight: 14.32 KDa
Source organism: Gallus gallus
UniProt:
  • Canonical: P02701 (Residues: 25-152; Coverage: 100%)
Gene name: AVD
Sequence domains: Avidin family
Structure domains: Avidin-like

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
1 bound ligand:
Ligand B1R 1 x B1R
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE X13
Spacegroup: P42212
Unit cell:
a: 60.22Å b: 60.22Å c: 62.47Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.167 0.165 0.211

Quick links

Citations

3 mentions without citation

Supramolecular chemistry in lipid bilayer membranes.
Bickerton et al. (2021)
2 more