› 4a1j

X-ray diffraction
2.2Å resolution

Ykud L,D-transpeptidase from B.subtilis

Released:
DOI: 10.2210/pdb4a1j/pdb
PDB entry 4a1j coloured by chain, front view.
PDB entry 4a1j coloured by chain, side view.
PDB entry 4a1j coloured by chain, top view.
Source organism: Bacillus subtilis
Entry authors: Blaise M, Fuglsang Midtgaard S, Roi Midtgaard S, Boesen T, Thirup S

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-128604 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative L,D-transpeptidase YkuD Chains: A, B
Molecule details ›
Chains: A, B
Length: 165 amino acids
Theoretical weight: 17.6 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: O34816 (Residues: 1-164; Coverage: 100%)
Gene names: BSU14040, ykuD
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand SO4 6 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-1
Spacegroup: P21212
Unit cell:
a: 56.24Å b: 86.28Å c: 74.14Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.197 0.192 0.244
Expression system: Escherichia coli BL21

Quick links