› 417d

X-ray diffraction
1.5Å resolution

A THYMINE-LIKE BASE ANALOGUE FORMS WOBBLE PAIRS WITH ADENINE

Released:
DOI: 10.2210/pdb417d/pdb
PDB entry 417d coloured by chain, front view.
PDB entry 417d coloured by chain, side view.
PDB entry 417d coloured by chain, top view.
Source organism: Unidentified
Primary publication:
A thymine-like base analogue forms wobble pairs with adenine in a Z-DNA duplex.
Schuerman GS, Van Meervelt L, Loakes D, Brown DM, Kong Thoo Lin P, Moore MH, Salisbury SA
J Mol Biol 282 1005-11 (1998)
PMID: 9753550

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-117136 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*AP*CP*GP*(C46)P*G)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 6 nucleotides
Theoretical weight: 1.84 KDa
Source organism: Unidentified
Expression system: Not provided

Ligands and Environments

No bound ligands
1 modified residue:
Ligand C46 2 x C46

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE BW7B
Spacegroup: P212121
Unit cell:
a: 17.338Å b: 31.432Å c: 44.486Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.156 0.155 0.25
Expression system: Not provided

Quick links

Citations

5 citation in other articles

The effect of tautomeric constant on the specificity of nucleotide incorporation during DNA replication: support for the rare tautomer hypothesis of substitution mutagenesis.
Harris et al. (2003)
4 more

1 mention without citation

DNA conformations and their sequence preferences.
Svozil et al. (2008)