› 413d

X-ray diffraction
1.8Å resolution

A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC)

Released:
DOI: 10.2210/pdb413d/pdb
PDB entry 413d coloured by chain, front view.
PDB entry 413d coloured by chain, side view.
PDB entry 413d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC).
Tanaka Y, Fujii S, Hiroaki H, Sakata T, Tanaka T, Uesugi S, Tomita K, Kyogoku Y
Nucleic Acids Res 27 949-55 (1999)
PMID: 9927725

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196762 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA (5'-R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3') Chain: A
Molecule details ›
Chain: A
Length: 13 nucleotides
Theoretical weight: 4.11 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU300
Spacegroup: C2
Unit cell:
a: 38.49Å b: 32.3Å c: 38.76Å
α: 90° β: 117.56° γ: 90°
R-values:
R R work R free
0.182 0.182 0.224
Expression system: Not provided

Quick links

Citations

6 review citations

Ribonuclease III mechanisms of double-stranded RNA cleavage.
Nicholson AW. (2014)
5 more

8 mentions without citation

Structure and Formation of Z-DNA and Z-RNA.
Krall et al. (2023)
7 more