spacer Fitting result in the O-layer of the subnanometer structure of the bacterial pKM101 type IV secretion system core complex digested with elastase
UniProt sequence   UniProt   CATH   Pfam   SCOP   Secondary structure   UniProt features   FASTA string  

Chain A: TRAF PROTEIN

1 E T S E G S S A L A K N L T P A R L K A S R A G V M A N P S L T V P K G K M I P C G T G T E L D T T V P G Q V S C R V S
E T S E G S S A L A K N L T P A R L K A S R A G V M A N P S L T V P K G K M I P C G T G T E L D T T V P G Q V S C R V S
171
61 Q D V Y S A D G L V R L I D K G S W V D G Q I T G G I K D G Q A R V F V L W E R I R N D Q D G T I V N I D S A G T N S L
Q D V Y S A D G L V R L I D K G S W V D G Q I T G G I K D G Q A R V F V L W E R I R N D Q D G T I V N I D S A G T N S L
121 G S A G I P G Q V D A H M W E R L R G A I M I S L F S D T L T A L V N Q T Q S N N I Q Y N S T E N S G G Q L A S E A L R
G S A G I P G Q V D A H M W E R L A G A I M I S L F S D T L T A L V N Q T Q S N N I Q Y N S T E N S G G Q L A S E A L R
181 S Y M S I P P T L Y D Q Q G D A V S I F V A R D L D F S G V Y T L A D N
S Y M S I P P T L Y D Q Q G D A V S I F V A R D L D F S G V Y T L A D N
386

Regions

UniProt

Q46705
171 .. 386 > 709 .. 904 (PDB)

Pfam

PF03743
739 .. 895 (PDB)

Chain B: TRAO PROTEIN

1 A A D K K R I T Q K L K Q T A F A G A K N Y Q Y V M S E Q P E M R S I Q P V H V W D N Y R F T R F E F P A N A E L P Q V
A A D K K R I T Q K L K Q T A F A G A K N Y Q Y V M S E Q P E M R S I Q P V H V W D N Y R F T R F E F P A N A E L P Q V
161
61 Y M I S A S G K E T L P N S H V V G E N R N I I E V E T V A K E W R I R L G D K V V G V R N N N F A P G R G A V A T G T
Y M I S A S G K E T L P N S H V V G E N R N I I E V E T V A K E W R I R L G D K V V G V R N N N F A P G R G A V A T G T
121 A S P D V R R V Q I
A S P D V R R V Q I
290

Regions

UniProt

Q46704
161 .. 290 > 905 .. 1034 (PDB)

Pfam

PF03524
905 .. 1012 (PDB)

Chain C: TRAN PROTEIN

1 M R S L L L M G V L L I S A C S S G H K P P P E P D W S N T V P V N K T I P V D T Q G G R N E S
M R S L L L M G V L L I S A C S S G H K P P P E P D W S N T V P V N K T I P V D T Q G G R N E S
1 48

Regions

UniProt

Q46702
1 .. 48 > 1021 .. 1068 (PDB)

Chain D: TRAF PROTEIN

1 E T S E G S S A L A K N L T P A R L K A S R A G V M A N P S L T V P K G K M I P C G T G T E L D T T V P G Q V S C R V S
E T S E G S S A L A K N L T P A R L K A S R A G V M A N P S L T V P K G K M I P C G T G T E L D T T V P G Q V S C R V S
171
61 Q D V Y S A D G L V R L I D K G S W V D G Q I T G G I K D G Q A R V F V L W E R I R N D Q D G T I V N I D S A G T N S L
Q D V Y S A D G L V R L I D K G S W V D G Q I T G G I K D G Q A R V F V L W E R I R N D Q D G T I V N I D S A G T N S L
121 G S A G I P G Q V D A H M W E R L R G A I M I S L F S D T L T A L V N Q T Q S N N I Q Y N S T E N S G G Q L A S E A L R
G S A G I P G Q V D A H M W E R L A G A I M I S L F S D T L T A L V N Q T Q S N N I Q Y N S T E N S G G Q L A S E A L R
181 S Y M S I P P T L Y D Q Q G D A V S I F V A R D L D F S G V Y T L A D N
S Y M S I P P T L Y D Q Q G D A V S I F V A R D L D F S G V Y T L A D N
386

Regions

UniProt

Q46705
171 .. 386 > 709 .. 904 (PDB)

Pfam

PF03743
739 .. 895 (PDB)

Chain E: TRAO PROTEIN

1 A A D K K R I T Q K L K Q T A F A G A K N Y Q Y V M S E Q P E M R S I Q P V H V W D N Y R F T R F E F P A N A E L P Q V
A A D K K R I T Q K L K Q T A F A G A K N Y Q Y V M S E Q P E M R S I Q P V H V W D N Y R F T R F E F P A N A E L P Q V
161
61 Y M I S A S G K E T L P N S H V V G E N R N I I E V E T V A K E W R I R L G D K V V G V R N N N F A P G R G A V A T G T
Y M I S A S G K E T L P N S H V V G E N R N I I E V E T V A K E W R I R L G D K V V G V R N N N F A P G R G A V A T G T
121 A S P D V R R V Q I
A S P D V R R V Q I
290

Regions

UniProt

Q46704
161 .. 290 > 905 .. 1034 (PDB)

Pfam

PF03524
905 .. 1012 (PDB)

Chain F: TRAN PROTEIN

1 M R S L L L M G V L L I S A C S S G H K P P P E P D W S N T V P V N K T I P V D T Q G G R N E S
M R S L L L M G V L L I S A C S S G H K P P P E P D W S N T V P V N K T I P V D T Q G G R N E S
1 48

Regions

UniProt

Q46702
1 .. 48 > 1021 .. 1068 (PDB)

Chain G: TRAF PROTEIN

1 E T S E G S S A L A K N L T P A R L K A S R A G V M A N P S L T V P K G K M I P C G T G T E L D T T V P G Q V S C R V S
E T S E G S S A L A K N L T P A R L K A S R A G V M A N P S L T V P K G K M I P C G T G T E L D T T V P G Q V S C R V S
171
61 Q D V Y S A D G L V R L I D K G S W V D G Q I T G G I K D G Q A R V F V L W E R I R N D Q D G T I V N I D S A G T N S L
Q D V Y S A D G L V R L I D K G S W V D G Q I T G G I K D G Q A R V F V L W E R I R N D Q D G T I V N I D S A G T N S L
121 G S A G I P G Q V D A H M W E R L R G A I M I S L F S D T L T A L V N Q T Q S N N I Q Y N S T E N S G G Q L A S E A L R
G S A G I P G Q V D A H M W E R L A G A I M I S L F S D T L T A L V N Q T Q S N N I Q Y N S T E N S G G Q L A S E A L R
181 S Y M S I P P T L Y D Q Q G D A V S I F V A R D L D F S G V Y T L A D N
S Y M S I P P T L Y D Q Q G D A V S I F V A R D L D F S G V Y T L A D N
386

Regions

UniProt

Q46705
171 .. 386 > 709 .. 904 (PDB)

Pfam

PF03743
739 .. 895 (PDB)

Chain H: TRAO PROTEIN

1 A A D K K R I T Q K L K Q T A F A G A K N Y Q Y V M S E Q P E M R S I Q P V H V W D N Y R F T R F E F P A N A E L P Q V
A A D K K R I T Q K L K Q T A F A G A K N Y Q Y V M S E Q P E M R S I Q P V H V W D N Y R F T R F E F P A N A E L P Q V
161
61 Y M I S A S G K E T L P N S H V V G E N R N I I E V E T V A K E W R I R L G D K V V G V R N N N F A P G R G A V A T G T
Y M I S A S G K E T L P N S H V V G E N R N I I E V E T V A K E W R I R L G D K V V G V R N N N F A P G R G A V A T G T
121 A S P D V R R V Q I
A S P D V R R V Q I
290

Regions

UniProt

Q46704
161 .. 290 > 905 .. 1034 (PDB)

Pfam

PF03524
905 .. 1012 (PDB)

Chain I: TRAN PROTEIN

1 M R S L L L M G V L L I S A C S S G H K P P P E P D W S N T V P V N K T I P V D T Q G G R N E S
M R S L L L M G V L L I S A C S S G H K P P P E P D W S N T V P V N K T I P V D T Q G G R N E S
1 48

Regions

UniProt

Q46702
1 .. 48 > 1021 .. 1068 (PDB)

Chain J: TRAF PROTEIN

1 E T S E G S S A L A K N L T P A R L K A S R A G V M A N P S L T V P K G K M I P C G T G T E L D T T V P G Q V S C R V S
E T S E G S S A L A K N L T P A R L K A S R A G V M A N P S L T V P K G K M I P C G T G T E L D T T V P G Q V S C R V S
171
61 Q D V Y S A D G L V R L I D K G S W V D G Q I T G G I K D G Q A R V F V L W E R I R N D Q D G T I V N I D S A G T N S L
Q D V Y S A D G L V R L I D K G S W V D G Q I T G G I K D G Q A R V F V L W E R I R N D Q D G T I V N I D S A G T N S L
121 G S A G I P G Q V D A H M W E R L R G A I M I S L F S D T L T A L V N Q T Q S N N I Q Y N S T E N S G G Q L A S E A L R
G S A G I P G Q V D A H M W E R L A G A I M I S L F S D T L T A L V N Q T Q S N N I Q Y N S T E N S G G Q L A S E A L R
181 S Y M S I P P T L Y D Q Q G D A V S I F V A R D L D F S G V Y T L A D N
S Y M S I P P T L Y D Q Q G D A V S I F V A R D L D F S G V Y T L A D N
386

Regions

UniProt

Q46705
171 .. 386 > 709 .. 904 (PDB)

Pfam

PF03743
739 .. 895 (PDB)

Chain K: TRAO PROTEIN

1 A A D K K R I T Q K L K Q T A F A G A K N Y Q Y V M S E Q P E M R S I Q P V H V W D N Y R F T R F E F P A N A E L P Q V
A A D K K R I T Q K L K Q T A F A G A K N Y Q Y V M S E Q P E M R S I Q P V H V W D N Y R F T R F E F P A N A E L P Q V
161
61 Y M I S A S G K E T L P N S H V V G E N R N I I E V E T V A K E W R I R L G D K V V G V R N N N F A P G R G A V A T G T
Y M I S A S G K E T L P N S H V V G E N R N I I E V E T V A K E W R I R L G D K V V G V R N N N F A P G R G A V A T G T
121 A S P D V R R V Q I
A S P D V R R V Q I
290

Regions

UniProt

Q46704
161 .. 290 > 905 .. 1034 (PDB)

Pfam

PF03524
905 .. 1012 (PDB)

Chain L: TRAN PROTEIN

1 M R S L L L M G V L L I S A C S S G H K P P P E P D W S N T V P V N K T I P V D T Q G G R N E S
M R S L L L M G V L L I S A C S S G H K P P P E P D W S N T V P V N K T I P V D T Q G G R N E S
1 48

Regions

UniProt

Q46702
1 .. 48 > 1021 .. 1068 (PDB)

Chain M: TRAF PROTEIN

1 E T S E G S S A L A K N L T P A R L K A S R A G V M A N P S L T V P K G K M I P C G T G T E L D T T V P G Q V S C R V S
E T S E G S S A L A K N L T P A R L K A S R A G V M A N P S L T V P K G K M I P C G T G T E L D T T V P G Q V S C R V S
171
61 Q D V Y S A D G L V R L I D K G S W V D G Q I T G G I K D G Q A R V F V L W E R I R N D Q D G T