3vht Summary

pdbe.org/3vht
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Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin

A publication describing this structure is not available. The depositing authors are Suzuki, N.search; Wakatsuki, S.search; Kawasaki, M.search

This crystal structure was determined using X-ray diffraction at a resolution of 2.4 Å and deposited in 2011.

The experimental data on which the structure is based was also deposited.

This PDB entry contains a complex of 3 biomacromolecules, namely Green fluorescent protein, Green fluorescent protein, ATPase WRNIP1, and Ubiquitin.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule most likely forms heterotrimers.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A Green fluorescent protein P42212 (1-230) (GFP_AEQVI)search Aequorea victoriasearch 94% 233 98%
B Green fluorescent protein, ATPase WRNIP1 Q96S55 (9-46) (WRIP1_HUMAN)search Homo sapienssearch < 90% 271 95%
C Ubiquitin E9Q9J0 (1-76) (E9Q9J0_MOUSE)search Mus musculussearch < 90% 76 100%


This entry contains 3 unique UniProt proteins:

UniProt accession Name Organism PDB
P42212 (1 - 230) Green fluorescent protein Aequorea victoria
Q96S55 (9 - 46) Green fluorescent protein, ATPase WRNIP1 Aequorea victoria, Homo sapiens
E9Q9J0 (1 - 76) Ubiquitin Mus musculus

Chain Sequence family (Pfam)
A (P42212) PF01353: Green fluorescent proteinsearch
B
C Ubiquitin familysearch

Chain ID Biological process (GO) Molecular function (GO) Cellular component (GO)
A (P42212) bioluminescencesearch generation of precursor metabolites and energysearch protein-chromophore linkagesearch molecular_functionsearch cellular_componentsearch
B (Q96S55) bioluminescencesearch DNA repairsearch generation of precursor metabolites and energysearch DNA bindingsearch

Chain InterPro annotation
A Green fluorescent protein, GFPsearch Green fluorescent proteinsearch Green fluorescent protein-relatedsearch Green fluorescent protein-likesearch
B Green fluorescent protein, GFPsearch Zinc finger, Rad18-type putativesearch Green fluorescent proteinsearch Green fluorescent protein-relatedsearch Green fluorescent protein-likesearch
C Ubiquitin-likesearch Ubiquitin conserved sitesearch Ubiquitinsearch Ubiquitin-related domainsearch