3rlh

X-ray diffraction
1.72Å resolution

Crystal structure of a class II phospholipase D from Loxosceles intermedia venom

Released:

Function and Biology Details

Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-143221 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Dermonecrotic toxin LiSicTox-alphaIA1a Chain: A
Molecule details ›
Chain: A
Length: 329 amino acids
Theoretical weight: 36.73 KDa
Source organism: Loxosceles intermedia
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P0CE80 (Residues: 1-306; Coverage: 100%)
Sequence domains: Glycerophosphoryl diester phosphodiesterase family
Structure domains: Phosphatidylinositol (PI) phosphodiesterase

Ligands and Environments

No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: LNLS BEAMLINE W01B-MX2
Spacegroup: P21
Unit cell:
a: 49.81Å b: 49.3Å c: 56.3Å
α: 90° β: 105.83° γ: 90°
R-values:
R R work R free
0.174 0.172 0.214
Expression system: Escherichia coli BL21(DE3)