3r6j Summary


Crystal Structure of the Capsid P Domain from Norwalk Virus Strain Hiroshima/1999

The structure was published by Hansman, G.S., Biertumpfel, C., Georgiev, I., et al., Zhou, T., Katayama, K., and Kwong, P.D., in 2011 in a paper entitled "Crystal structures of GII.10 and GII.12 norovirus protruding domains in complex with histo-blood group antigens reveal details for a potential site of vulnerability." (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 1.75 Å and deposited in 2011.

The experimental data on which the structure is based was also deposited.

The PDB entry contains the structure of VP1 protein. This molecule has the UniProt identifier Q54AD6 (Q54AD6_9CALI)search. The sample contained 305 residues which is < 90% of the natural sequence. Out of 305 residues 304 were observed and are deposited in the PDB.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule most likely forms homodimers.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):

Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A VP1 protein Q54AD6 (225-525) (Q54AD6_9CALI)search Norwalk-like virussearch < 90% 305 100%

This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
Q54AD6 (225 - 525) VP1 protein Norwalk-like virus

Chain Sequence family (Pfam)
A Calicivirus coat proteinsearch, Calicivirus coat protein C-terminalsearch
Chain InterPro annotation
A Calicivirus coat protein/non-structural polyproteinsearch Calicivirus coat protein C-terminalsearch