3q6r Summary

pdbe.org/3q6r
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Crystal Structure of P Domain from Norwalk Virus Strain Vietnam 026 in complex with disordered HBGA type Lex

The structure was published by Hansman, G.S., Biertumpfel, C., Georgiev, I., et al., Zhou, T., Katayama, K., and Kwong, P.D., in 2011 in a paper entitled "Crystal structures of GII.10 and GII.12 norovirus protruding domains in complex with histo-blood group antigens reveal details for a potential site of vulnerability." (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 1.4 Å and deposited in 2011.

The experimental data on which the structure is based was also deposited.

This PDB entry contains multiple copies of the structure of Capsid protein.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule most likely forms homodimers.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A Capsid protein Q5F4T5 (224-538) (Q5F4T5_9CALI)search Norwalk virussearch < 90% 319 98%
B Capsid protein Q5F4T5 (224-538) (Q5F4T5_9CALI)search Norwalk virussearch < 90% 319 98%


This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
Q5F4T5 (224 - 538) Capsid protein Norwalk virus

Chain Sequence family (Pfam)
A, B Calicivirus coat proteinsearch, Calicivirus coat protein C-terminalsearch
Chain InterPro annotation
A, B Calicivirus coat protein/non-structural polyproteinsearch Calicivirus coat protein C-terminalsearch