spacer Crystal Structure of HLA-DR1 with CLIP106-120, flipped peptide orientation
UniProt sequence   UniProt   CATH   Pfam   SCOP   Secondary structure   UniProt features   FASTA string  

Chain A: HLA class II histocompatibility antigen, DR alpha chain

1 M I K E E H V I I Q A E F Y L N P D Q S G E F M F D F D G D E I F H V D M A K K E T V W R L E E F G R F A S F E A Q G A
I K E E H V I I Q A E F Y L N P D Q S G E F M F D F D G D E I F H V D M A K K E T V W R L E E F G R F A S F E A Q G A
26
61 L A N I A V D K A N L E I M T K R S N Y T P I T N V P P E V T V L T N S P V E L R E P N V L I C F I D K F T P P V V N V
L A N I A V D K A N L E I M T K R S N Y T P I T N V P P E V T V L T N S P V E L R E P N V L I C F I D K F T P P V V N V
121 T W L R N G K P V T T G V S E T V F L P R E D H L F R K F H Y L P F L P S T E D V Y D C R V E H W G L D E P L L K H W E
T W L R N G K P V T T G V S E T V F L P R E D H L F R K F H Y L P F L P S T E D V Y D C R V E H W G L D E P L L K H W E
181 F D A P S P L P E T T E N
F D A P S P L P E T T E N
217

Regions

UniProt

P01903
26 .. 217 > 1 .. 192 (PDB)

Pfam

PF00993
4 .. 84 (PDB)
PF07654
93 .. 175 (PDB)

Chain B: HLA class II histocompatibility antigen, DRB1-1 beta chain

1 M G D T R P R F L W Q L K F E C H F F N G T E R V R L L E R C I Y N Q E E S V R F D S D V G E Y R A V T E L G R P D A E
G D T R P R F L W Q L K F E C H F F N G T E R V R L L E R C I Y N Q E E S V R F D S D V G E Y R A V T E L G R P D A E
30
61 Y W N S Q K D L L E Q R R A A V D T Y C R H N Y G V G E S F T V Q R R V E P K V T V Y P S K T Q P L Q H H N L L V C S V
Y W N S Q K D L L E Q R R A A V D T Y C R H N Y G V G E S F T V Q R R V E P K V T V Y P S K T Q P L Q H H N L L V C S V
121 S G F Y P G S I E V R W F R N G Q E E K A G V V S T G L I Q N G D W T F Q T L V M L E T V P R S G E V Y T C Q V E H P S
S G F Y P G S I E V R W F R N G Q E E K A G V V S T G L I Q N G D W T F Q T L V M L E T V P R S G E V Y T C Q V E H P S
181 V T S P L T V E W R A R S E S A Q S K
V T S P L T V E W R A R S E S A Q S K
227

Regions

UniProt

P04229
30 .. 227 > 1 .. 198 (PDB)

Pfam

PF00969
13 .. 87 (PDB)
PF07654
103 .. 185 (PDB)

Chain C: HLA class II histocompatibility antigen gamma chain

1 K M R M A T P L L M Q A L P M
K M R M A T P L L M Q A L P M
106 120

Regions

UniProt

P04233
106 .. 120 > 106 .. 120 (PDB)

Pfam

PF09307
106 .. 120 (PDB)

Chain D: HLA class II histocompatibility antigen, DR alpha chain

1 M I K E E H V I I Q A E F Y L N P D Q S G E F M F D F D G D E I F H V D M A K K E T V W R L E E F G R F A S F E A Q G A
I K E E H V I I Q A E F Y L N P D Q S G E F M F D F D G D E I F H V D M A K K E T V W R L E E F G R F A S F E A Q G A
26
61 L A N I A V D K A N L E I M T K R S N Y T P I T N V P P E V T V L T N S P V E L R E P N V L I C F I D K F T P P V V N V
L A N I A V D K A N L E I M T K R S N Y T P I T N V P P E V T V L T N S P V E L R E P N V L I C F I D K F T P P V V N V
121 T W L R N G K P V T T G V S E T V F L P R E D H L F R K F H Y L P F L P S T E D V Y D C R V E H W G L D E P L L K H W E
T W L R N G K P V T T G V S E T V F L P R E D H L F R K F H Y L P F L P S T E D V Y D C R V E H W G L D E P L L K H W E
181 F D A P S P L P E T T E N
F D A P S P L P E T T E N
217

Regions

UniProt

P01903
26 .. 217 > 1 .. 192 (PDB)

Pfam

PF00993
4 .. 84 (PDB)
PF07654
93 .. 175 (PDB)

Chain E: HLA class II histocompatibility antigen, DRB1-1 beta chain

1 M G D T R P R F L W Q L K F E C H F F N G T E R V R L L E R C I Y N Q E E S V R F D S D V G E Y R A V T E L G R P D A E
G D T R P R F L W Q L K F E C H F F N G T E R V R L L E R C I Y N Q E E S V R F D S D V G E Y R A V T E L G R P D A E
30
61 Y W N S Q K D L L E Q R R A A V D T Y C R H N Y G V G E S F T V Q R R V E P K V T V Y P S K T Q P L Q H H N L L V C S V
Y W N S Q K D L L E Q R R A A V D T Y C R H N Y G V G E S F T V Q R R V E P K V T V Y P S K T Q P L Q H H N L L V C S V
121 S G F Y P G S I E V R W F R N G Q E E K A G V V S T G L I Q N G D W T F Q T L V M L E T V P R S G E V Y T C Q V E H P S
S G F Y P G S I E V R W F R N G Q E E K A G V V S T G L I Q N G D W T F Q T L V M L E T V P R S G E V Y T C Q V E H P S
181 V T S P L T V E W R A R S E S A Q S K
V T S P L T V E W R A R S E S A Q S K
227

Regions

UniProt

P04229
30 .. 227 > 1 .. 198 (PDB)

Pfam

PF00969
13 .. 87 (PDB)
PF07654
103 .. 185 (PDB)

Chain F: HLA class II histocompatibility antigen gamma chain

1 K M R M A T P L L M Q A L P M
K M R M A T P L L M Q A L P M
106 120

Regions

UniProt

P04233
106 .. 120 > 106 .. 120 (PDB)

Pfam

PF09307
106 .. 120 (PDB)
spacer