› 3k89

X-ray diffraction
1.6Å resolution

Structure of X. oryzae pv. oryzae KACC10331, Xoo0880(fabD) complexed with glycerol

Released:
DOI: 10.2210/pdb3k89/pdb
PDB entry 3k89 coloured by chain, front view.
PDB entry 3k89 coloured by chain, side view.
PDB entry 3k89 coloured by chain, top view.
Source organism: Xanthomonas oryzae pv. oryzae
Entry authors: Natarajan S, Jung JW, Kang LW

Function and Biology Details

Reaction catalysed: 
Malonyl-CoA + an [acyl-carrier-protein] = CoA + a malonyl-[acyl-carrier-protein]
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177163 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Malonyl CoA-acyl carrier protein transacylase Chain: A
Molecule details ›
Chain: A
Length: 314 amino acids
Theoretical weight: 32.65 KDa
Source organism: Xanthomonas oryzae pv. oryzae
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5H4I7 (Residues: 1-314; Coverage: 100%)
Gene names: XOO0880, fabD
Sequence domains: Acyl transferase domain
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand GOL 1 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 4A
Spacegroup: P212121
Unit cell:
a: 41.361Å b: 74.095Å c: 98.617Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.18 0.179 0.21
Expression system: Escherichia coli

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