› 3hyv

X-ray diffraction
2.3Å resolution

3-D X-Ray structure of the sulfide:quinone oxidoreductase from the hyperthermophilic bacterium Aquifex aeolicus

Released:
DOI: 10.2210/pdb3hyv/pdb
PDB entry 3hyv coloured by chain, front view.
PDB entry 3hyv coloured by chain, side view.
PDB entry 3hyv coloured by chain, top view.
Source organism: Aquifex aeolicus
Primary publication:
The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration.
Marcia M, Ermler U, Peng G, Michel H
Proc Natl Acad Sci U S A 106 9625-30 (2009)
PMID: 19487671

Function and Biology Details

Reaction catalysed: 
n sulfide + n quinone = polysulfide + n quinol
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assemblies composition:
homo trimer
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-130590 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Sulfide-quinone reductase Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 430 amino acids
Theoretical weight: 47.53 KDa
Source organism: Aquifex aeolicus
UniProt:
  • Canonical: O67931 (Residues: 1-430; Coverage: 100%)
Gene names: aq_2186, sqr
Sequence domains: Pyridine nucleotide-disulphide oxidoreductase
Structure domains: FAD/NAD(P)-binding domain

Ligands and Environments


Cofactor: Ligand FAD 6 x FAD
5 bound ligands:
Ligand LMT 6 x LMT
Ligand H2S 6 x H2S
Ligand PS9 7 x PS9
Ligand MES 6 x MES
Ligand SO4 24 x SO4
1 modified residue:
Ligand CSS 6 x CSS

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA, SLS BEAMLINE X06SA
Spacegroup: P212121
Unit cell:
a: 112.85Å b: 154.92Å c: 178.04Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.195 0.193 0.235

Quick links

Citations

16 review citations

Enzymology of H2S biogenesis, decay and signaling.
Kabil et al. (2014)
15 more