3hng Summary


Crystal structure of VEGFR1 in complex with N-(4-Chlorophenyl)-2-((pyridin-4-ylmethyl)amino)benzamide

A publication describing this structure is not available. The depositing authors are Tresaugues, L.search; Roos, A.search; Arrowsmith, C.H.search; Berglund, H.search; Bountra, C.search; Collins, R.search; Edwards, A.M.search; Flodin, S.search; Flores, A.search; Graslund, S.search; Hammarstrom, M.search; Johansson, A.search; Johansson, I.search; Karlberg, T.search; Kotenyova, T.search; Moche, M.search; Nyman, T.search; Persson, C.search; Kragh-Nielsen, T.search; Kotzch, A.search; Sagemark, J.search; Schueler, H.search; Schutz, P.search; Siponen, M.I.search; Svensson, L.search; Thorsell, A.G.search; Van der Berg, S.search; Weigelt, J.search; Welin, M.search; Wisniewska, M.search; Nordlund, P.search; Structural Genomics Consortium (SGC)search

This crystal structure was determined using X-ray diffraction at a resolution of 2.7 Å and deposited in 2009.

The experimental data on which the structure is based was also deposited.

The PDB entry contains the structure of Vascular endothelial growth factor receptor 1. This molecule has the UniProt identifier P17948 (VGFR1_HUMAN)search. The sample contained 360 residues which is < 90% of the natural sequence. Out of 360 residues 285 were observed and are deposited in the PDB.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule is most likely monomeric.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):

Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A Vascular endothelial growth factor receptor 1 P17948 (801-1158) (VGFR1_HUMAN)search Homo sapienssearch < 90% 360 80%

This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
P17948 (801 - 1158) Vascular endothelial growth factor receptor 1 Homo sapiens

Chain Structural classification (CATH) Sequence family (Pfam)
A Phosphorylase Kinase; domain 1search, Transferase(Phosphotransferase) domain 1search Protein tyrosine kinasesearch

Chain ID Molecular function (GO) Cellular component (GO) Biological process (GO)
A (P17948) ATP bindingsearch protein tyrosine kinase activitysearch transmembrane receptor protein tyrosine kinase activitysearch protein kinase activitysearch vascular endothelial growth factor-activated receptor activitysearch integral component of plasma membranesearch membranesearch protein phosphorylationsearch vascular endothelial growth factor receptor signaling pathwaysearch transmembrane receptor protein tyrosine kinase signaling pathwaysearch

Chain InterPro annotation
A Protein kinase domainsearch Serine-threonine/tyrosine-protein kinase catalytic domainsearch Tyrosine-protein kinase, receptor class III, conserved sitesearch Tyrosine-protein kinase, active sitesearch Vascular endothelial growth factor receptor 3 (VEGFR3)search Protein kinase-like domainsearch Protein kinase, ATP binding sitesearch Tyrosine-protein kinase, catalytic domainsearch