3eaz Citations

Combining biophysical methods to analyze the disulfide bond in SH2 domain of C-terminal Src kinase.

Biophys Rep 2 33-43 (2016)
Cited: 12 times
EuropePMC logo PMID: 27819029

Abstract

The Src Homology 2 (SH2) domain is a structurally conserved protein domain that typically binds to a phosphorylated tyrosine in a peptide motif from the target protein. The SH2 domain of C-terminal Src kinase (Csk) contains a single disulfide bond, which is unusual for most SH2 domains. Although the global motion of SH2 domain regulates Csk function, little is known about the relationship between the disulfide bond and binding of the ligand. In this study, we combined X-ray crystallography, solution NMR, and other biophysical methods to reveal the interaction network in Csk. Denaturation studies have shown that disulfide bond contributes significantly to the stability of SH2 domain, and crystal structures of the oxidized and C122S mutant showed minor conformational changes. We further investigated the binding of SH2 domain to a phosphorylated peptide from Csk-binding protein upon reduction and oxidation using both NMR and fluorescence approaches. This work employed NMR, X-ray cryptography, and other biophysical methods to study a disulfide bond in Csk SH2 domain. In addition, this work provides in-depth understanding of the structural dynamics of Csk SH2 domain.

Articles - 3eaz mentioned but not cited (3)

  1. The BioFragment Database (BFDb): An open-data platform for computational chemistry analysis of noncovalent interactions. Burns LA, Faver JC, Zheng Z, Marshall MS, Smith DGA, Vanommeslaeghe K, MacKerell AD, Merz KM, Sherrill CD. J Chem Phys 147 161727 (2017)
  2. Combining biophysical methods to analyze the disulfide bond in SH2 domain of C-terminal Src kinase. Liu D, Cowburn D. Biophys Rep 2 33-43 (2016)
  3. The dipeptidyl peptidase IV inhibitors vildagliptin and K-579 inhibit a phospholipase C: a case of promiscuous scaffolds in proteins. Chakraborty S, Rendón-Ramírez A, Ásgeirsson B, Dutta M, Ghosh AS, Oda M, Venkatramani R, Rao BJ, Dandekar AM, Goñi FM. F1000Res 2 286 (2013)


Reviews citing this publication (4)

Articles citing this publication (5)

  1. Prediction of disulfide bond engineering sites using a machine learning method. Gao X, Dong X, Li X, Liu Z, Liu H. Sci Rep 10 10330 (2020)
  2. In vitro generation and bioactivity evaluation of C-reactive protein intermediate. Lv JM, Wang MY. PLoS One 13 e0198375 (2018)
  3. Letter Protein crystal quality oriented disulfide bond engineering. Pu M, Xu Z, Peng Y, Hou Y, Liu D, Wang Y, Liu H, Song G, Liu ZJ. Protein Cell 9 659-663 (2018)
  4. Letter Domain interactions of C-terminal Src Kinase determined through NMR spectroscopy with segmental isotope labeling. Liu D, Yuan Y, Xu R, Cowburn D. Protein Cell 8 67-71 (2017)
  5. Stabilization of Cereibacter sphaeroides Photosynthetic Reaction Center by the Introduction of Disulfide Bonds. Selikhanov G, Atamas A, Yukhimchuk D, Fufina T, Vasilieva L, Gabdulkhakov A. Membranes (Basel) 13 154 (2023)